Analysis of interatomic Contacts of Structural Units in PDB entry:
8GN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GN5 entry

There are 4 chains in PDB entry 8GN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 4	GLN 428
B	ASN 4	GLN 428
C	ASN 4	GLN 428
D	ASN 4	GLN 428

There are 34 helices in PDB entry 8GN5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	24	Right-handed alpha
Helix 2	AA2	A	26	30	Right-handed 310
Helix 3	AA3	A	91	95	Right-handed 310
Helix 4	AA4	A	96	127	Right-handed alpha
Helix 5	AA5	A	146	157	Right-handed alpha
Helix 6	AA6	A	171	176	Right-handed alpha
Helix 7	AA7	A	177	179	Right-handed 310
Helix 8	AA8	A	321	326	Right-handed alpha
Helix 9	AA9	A	417	419	Right-handed 310
Helix 10	AB1	B	8	22	Right-handed alpha
Helix 11	AB2	B	24	29	Right-handed alpha
Helix 12	AB3	B	91	95	Right-handed 310
Helix 13	AB4	B	96	127	Right-handed alpha
Helix 14	AB5	B	146	159	Right-handed alpha
Helix 15	AB6	B	171	176	Right-handed alpha
Helix 16	AB7	B	177	179	Right-handed 310
Helix 17	AB8	B	321	326	Right-handed alpha
Helix 18	AB9	B	417	419	Right-handed 310
Helix 19	AC1	C	7	23	Right-handed alpha
Helix 20	AC2	C	26	30	Right-handed 310
Helix 21	AC3	C	91	95	Right-handed 310
Helix 22	AC4	C	96	127	Right-handed alpha
Helix 23	AC5	C	146	159	Right-handed alpha
Helix 24	AC6	C	171	178	Right-handed alpha
Helix 25	AC7	C	323	328	Right-handed 310
Helix 26	AC8	C	417	419	Right-handed 310
Helix 27	AC9	D	7	24	Right-handed alpha
Helix 28	AD1	D	25	28	Right-handed 310
Helix 29	AD2	D	90	94	Right-handed 310
Helix 30	AD3	D	96	127	Right-handed alpha
Helix 31	AD4	D	146	157	Right-handed alpha
Helix 32	AD5	D	171	176	Right-handed alpha
Helix 33	AD6	D	321	326	Right-handed alpha
Helix 34	AD7	D	417	419	Right-handed 310

There are 28 sheets in PDB entry 8GN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	360	362	parallel
Strand 3	A	412	414	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	74	76	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	B	83	89	anti-parallel
Strand 3	B	402	409	anti-parallel
Strand 4	B	389	397	anti-parallel
Strand 5	B	377	382	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	403	410	anti-parallel
Strand 3	A	389	395	anti-parallel
Strand 4	A	377	382	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	421	425	parallel
Strand 3	A	351	354	anti-parallel
Strand 4	A	167	170	anti-parallel
Strand 5	A	211	213	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	249	250	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	305	309	anti-parallel
Strand 3	A	295	301	anti-parallel
Strand 4	A	272	275	anti-parallel
Strand 5	A	340	342	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	288	292	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	359	362	parallel
Strand 3	B	412	415	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	74	77	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	421	425	parallel
Strand 3	B	351	354	anti-parallel
Strand 4	B	167	170	anti-parallel
Strand 5	B	211	213	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	249	251	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	305	309	anti-parallel
Strand 3	B	295	301	anti-parallel
Strand 4	B	272	275	anti-parallel
Strand 5	B	340	342	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	288	292	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	360	362	parallel
Strand 3	C	412	414	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	73	78	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	403	410	anti-parallel
Strand 3	C	389	396	anti-parallel
Strand 4	C	377	382	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	421	425	parallel
Strand 3	C	351	355	anti-parallel
Strand 4	C	166	170	anti-parallel
Strand 5	C	211	213	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	249	250	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	305	309	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	272	275	anti-parallel
Strand 5	C	340	342	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	281	first strand
Strand 2	C	288	292	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	359	362	parallel
Strand 3	D	412	415	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	73	78	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	402	410	anti-parallel
Strand 3	D	389	397	anti-parallel
Strand 4	D	377	382	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	421	425	parallel
Strand 3	D	351	354	anti-parallel
Strand 4	D	167	170	anti-parallel
Strand 5	D	211	213	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	249	250	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	260	first strand
Strand 2	D	305	309	anti-parallel
Strand 3	D	295	301	anti-parallel
Strand 4	D	272	275	anti-parallel
Strand 5	D	340	342	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	281	first strand
Strand 2	D	288	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GN5