Analysis of interatomic Contacts of Structural Units in PDB entry:
8GN7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GN7 entry

There are 10 chains in PDB entry 8GN7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	GLY 229
B	GLY 3	GLY 229
G	GLY 3	GLY 229
J	GLY 3	GLY 229
M	GLY 3	GLY 229
P	GLY 3	GLY 229
S	GLY 3	GLY 229
V	GLY 3	GLY 229
Y	GLY 3	GLY 229
b	GLY 3	GLY 229

There are 89 helices in PDB entry 8GN7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	13	Right-handed alpha
Helix 2	AA2	A	14	17	Right-handed 310
Helix 3	AA3	A	19	32	Right-handed alpha
Helix 4	AA4	A	33	40	Right-handed alpha
Helix 5	AA5	A	40	45	Right-handed alpha
Helix 6	AA6	A	60	70	Right-handed alpha
Helix 7	AA7	A	73	86	Right-handed alpha
Helix 8	AA8	A	86	102	Right-handed alpha
Helix 9	AA9	A	140	166	Right-handed alpha
Helix 10	AB1	A	192	226	Right-handed alpha
Helix 11	AB2	B	8	13	Right-handed alpha
Helix 12	AB3	B	19	32	Right-handed alpha
Helix 13	AB4	B	33	40	Right-handed alpha
Helix 14	AB5	B	60	70	Right-handed alpha
Helix 15	AB6	B	73	86	Right-handed alpha
Helix 16	AB7	B	87	102	Right-handed alpha
Helix 17	AB8	B	140	166	Right-handed alpha
Helix 18	AB9	B	192	226	Right-handed alpha
Helix 19	AC1	G	8	13	Right-handed alpha
Helix 20	AC2	G	14	17	Right-handed 310
Helix 21	AC3	G	19	32	Right-handed alpha
Helix 22	AC4	G	33	40	Right-handed alpha
Helix 23	AC5	G	60	70	Right-handed alpha
Helix 24	AC6	G	73	87	Right-handed alpha
Helix 25	AC7	G	87	102	Right-handed alpha
Helix 26	AC8	G	140	165	Right-handed alpha
Helix 27	AC9	G	192	212	Right-handed alpha
Helix 28	AD1	G	212	226	Right-handed alpha
Helix 29	AD2	J	8	13	Right-handed alpha
Helix 30	AD3	J	14	17	Right-handed 310
Helix 31	AD4	J	19	32	Right-handed alpha
Helix 32	AD5	J	33	40	Right-handed alpha
Helix 33	AD6	J	60	70	Right-handed alpha
Helix 34	AD7	J	73	102	Right-handed alpha
Helix 35	AD8	J	140	165	Right-handed alpha
Helix 36	AD9	J	192	226	Right-handed alpha
Helix 37	AE1	M	8	13	Right-handed alpha
Helix 38	AE2	M	19	32	Right-handed alpha
Helix 39	AE3	M	33	40	Right-handed alpha
Helix 40	AE4	M	60	70	Right-handed alpha
Helix 41	AE5	M	73	86	Right-handed alpha
Helix 42	AE6	M	86	102	Right-handed alpha
Helix 43	AE7	M	140	166	Right-handed alpha
Helix 44	AE8	M	192	226	Right-handed alpha
Helix 45	AE9	P	8	13	Right-handed alpha
Helix 46	AF1	P	19	32	Right-handed alpha
Helix 47	AF2	P	33	40	Right-handed alpha
Helix 48	AF3	P	60	70	Right-handed alpha
Helix 49	AF4	P	73	86	Right-handed alpha
Helix 50	AF5	P	87	102	Right-handed alpha
Helix 51	AF6	P	140	166	Right-handed alpha
Helix 52	AF7	P	192	226	Right-handed alpha
Helix 53	AF8	S	8	13	Right-handed alpha
Helix 54	AF9	S	19	32	Right-handed alpha
Helix 55	AG1	S	33	42	Right-handed alpha
Helix 56	AG2	S	60	70	Right-handed alpha
Helix 57	AG3	S	73	86	Right-handed alpha
Helix 58	AG4	S	86	102	Right-handed alpha
Helix 59	AG5	S	140	165	Right-handed alpha
Helix 60	AG6	S	192	212	Right-handed alpha
Helix 61	AG7	S	212	226	Right-handed alpha
Helix 62	AG8	V	8	13	Right-handed alpha
Helix 63	AG9	V	14	17	Right-handed 310
Helix 64	AH1	V	19	32	Right-handed alpha
Helix 65	AH2	V	33	40	Right-handed alpha
Helix 66	AH3	V	60	70	Right-handed alpha
Helix 67	AH4	V	73	86	Right-handed alpha
Helix 68	AH5	V	87	102	Right-handed alpha
Helix 69	AH6	V	140	166	Right-handed alpha
Helix 70	AH7	V	192	226	Right-handed alpha
Helix 71	AH8	Y	8	13	Right-handed alpha
Helix 72	AH9	Y	19	32	Right-handed alpha
Helix 73	AI1	Y	33	40	Right-handed alpha
Helix 74	AI2	Y	60	70	Right-handed alpha
Helix 75	AI3	Y	73	86	Right-handed alpha
Helix 76	AI4	Y	87	102	Right-handed alpha
Helix 77	AI5	Y	140	165	Right-handed alpha
Helix 78	AI6	Y	192	212	Right-handed alpha
Helix 79	AI7	Y	212	226	Right-handed alpha
Helix 80	AI8	b	8	13	Right-handed alpha
Helix 81	AI9	b	14	17	Right-handed 310
Helix 82	AJ1	b	19	32	Right-handed alpha
Helix 83	AJ2	b	33	40	Right-handed alpha
Helix 84	AJ3	b	40	45	Right-handed alpha
Helix 85	AJ4	b	60	70	Right-handed alpha
Helix 86	AJ5	b	73	86	Right-handed alpha
Helix 87	AJ6	b	86	102	Right-handed alpha
Helix 88	AJ7	b	140	166	Right-handed alpha
Helix 89	AJ8	b	192	226	Right-handed alpha

There are 10 sheets in PDB entry 8GN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	184	187	anti-parallel
Strand 3	A	172	175	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	184	187	anti-parallel
Strand 3	B	172	175	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	184	187	anti-parallel
Strand 3	G	172	175	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	184	187	anti-parallel
Strand 3	J	172	175	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	184	187	anti-parallel
Strand 3	M	172	175	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	53	54	first strand
Strand 2	P	184	187	anti-parallel
Strand 3	P	172	175	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	53	54	first strand
Strand 2	S	184	187	anti-parallel
Strand 3	S	172	175	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	53	54	first strand
Strand 2	V	184	187	anti-parallel
Strand 3	V	172	175	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	53	54	first strand
Strand 2	Y	184	187	anti-parallel
Strand 3	Y	172	175	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	53	54	first strand
Strand 2	b	184	187	anti-parallel
Strand 3	b	172	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GN7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GN7