Analysis of interatomic Contacts of Structural Units in PDB entry:
8GN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GN8 entry

There are 5 chains in PDB entry 8GN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLY 3PRO 228
A
 GLY 3PRO 228
B
 GLY 3PRO 228
C
 GLY 3PRO 228
E
 GLY 3PRO 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8GN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
11 16Right-handed alpha
Helix 2
AA2
D
19 32Right-handed alpha
Helix 3
AA3
D
35 42Right-handed alpha
Helix 4
AA4
D
43 48Right-handed 310
Helix 5
AA5
D
60 70Right-handed alpha
Helix 6
AA6
D
73 102Right-handed alpha
Helix 7
AA7
D
102 107Right-handed alpha
Helix 8
AA8
D
140 166Right-handed alpha
Helix 9
AA9
D
190 219Right-handed alpha
Helix 10
AB1
D
223 227Right-handed 310
Helix 11
AB2
A
11 16Right-handed alpha
Helix 12
AB3
A
19 32Right-handed alpha
Helix 13
AB4
A
35 41Right-handed alpha
Helix 14
AB5
A
43 48Right-handed 310
Helix 15
AB6
A
60 70Right-handed alpha
Helix 16
AB7
A
73 107Right-handed alpha
Helix 17
AB8
A
140 166Right-handed alpha
Helix 18
AB9
A
190 225Right-handed alpha
Helix 19
AC1
B
11 16Right-handed alpha
Helix 20
AC2
B
19 32Right-handed alpha
Helix 21
AC3
B
35 41Right-handed alpha
Helix 22
AC4
B
43 47Right-handed 310
Helix 23
AC5
B
60 70Right-handed alpha
Helix 24
AC6
B
73 102Right-handed alpha
Helix 25
AC7
B
102 107Right-handed alpha
Helix 26
AC8
B
140 166Right-handed alpha
Helix 27
AC9
B
190 225Right-handed alpha
Helix 28
AD1
C
11 16Right-handed alpha
Helix 29
AD2
C
19 32Right-handed alpha
Helix 30
AD3
C
35 42Right-handed alpha
Helix 31
AD4
C
43 47Right-handed 310
Helix 32
AD5
C
60 70Right-handed alpha
Helix 33
AD6
C
73 102Right-handed alpha
Helix 34
AD7
C
102 107Right-handed alpha
Helix 35
AD8
C
140 166Right-handed alpha
Helix 36
AD9
C
190 225Right-handed alpha
Helix 37
AE1
E
11 16Right-handed alpha
Helix 38
AE2
E
19 32Right-handed alpha
Helix 39
AE3
E
35 42Right-handed alpha
Helix 40
AE4
E
43 47Right-handed 310
Helix 41
AE5
E
60 70Right-handed alpha
Helix 42
AE6
E
73 107Right-handed alpha
Helix 43
AE7
E
140 166Right-handed alpha
Helix 44
AE8
E
190 225Right-handed alpha
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There are 5 sheets in PDB entry 8GN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 175first strand
Strand 2
D
184 187anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
184 187anti-parallel
Strand 3
A
172 175anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
184 187anti-parallel
Strand 3
B
172 175anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 175first strand
Strand 2
C
184 187anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 54first strand
Strand 2
E
184 187anti-parallel
Strand 3
E
172 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il