Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GNA entry

There are 3 chains in PDB entry 8GNA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	PHE 1691
C	A -17	C 15
J	G 24	U 40

There are 38 helices in PDB entry 8GNA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	38	Right-handed alpha
Helix 2	AA2	A	59	78	Right-handed alpha
Helix 3	AA3	A	127	134	Right-handed alpha
Helix 4	AA4	A	168	173	Right-handed alpha
Helix 5	AA5	A	213	215	Right-handed 310
Helix 6	AA6	A	216	227	Right-handed alpha
Helix 7	AA7	A	270	288	Right-handed alpha
Helix 8	AA8	A	292	303	Right-handed alpha
Helix 9	AA9	A	308	313	Right-handed alpha
Helix 10	AB1	A	338	350	Right-handed alpha
Helix 11	AB2	A	354	373	Right-handed alpha
Helix 12	AB3	A	471	488	Right-handed alpha
Helix 13	AB4	A	503	511	Right-handed alpha
Helix 14	AB5	A	569	580	Right-handed alpha
Helix 15	AB6	A	594	598	Right-handed 310
Helix 16	AB7	A	618	624	Right-handed alpha
Helix 17	AB8	A	625	628	Right-handed 310
Helix 18	AB9	A	630	637	Right-handed alpha
Helix 19	AC1	A	654	657	Right-handed 310
Helix 20	AC2	A	658	665	Right-handed alpha
Helix 21	AC3	A	686	693	Right-handed alpha
Helix 22	AC4	A	723	740	Right-handed alpha
Helix 23	AC5	A	752	759	Right-handed alpha
Helix 24	AC6	A	831	848	Right-handed alpha
Helix 25	AC7	A	873	878	Right-handed alpha
Helix 26	AC8	A	910	914	Right-handed 310
Helix 27	AC9	A	999	1016	Right-handed alpha
Helix 28	AD1	A	1395	1399	Right-handed 310
Helix 29	AD2	A	1408	1412	Right-handed 310
Helix 30	AD3	A	1414	1420	Right-handed alpha
Helix 31	AD4	A	1463	1468	Right-handed alpha
Helix 32	AD5	A	1486	1493	Right-handed alpha
Helix 33	AD6	A	1528	1540	Right-handed alpha
Helix 34	AD7	A	1583	1588	Right-handed alpha
Helix 35	AD8	A	1590	1601	Right-handed alpha
Helix 36	AD9	A	1615	1618	Right-handed 310
Helix 37	AE1	A	1619	1630	Right-handed alpha
Helix 38	AE2	A	1675	1681	Right-handed alpha

There are 22 sheets in PDB entry 8GNA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	42	45	parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	156	158	anti-parallel
Strand 5	A	205	211	anti-parallel
Strand 6	A	151	153	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	42	45	parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	156	158	anti-parallel
Strand 5	A	205	211	anti-parallel
Strand 6	A	7	14	anti-parallel
Strand 7	A	233	239	anti-parallel
Strand 8	A	229	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	403	405	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	193	194	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	188	190	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	561	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	556	559	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	561	565	anti-parallel
Strand 3	A	414	424	anti-parallel
Strand 4	A	601	612	anti-parallel
Strand 5	A	589	590	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	459	460	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	517	518	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	533	first strand
Strand 2	A	540	550	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	722	first strand
Strand 2	A	772	774	anti-parallel
Strand 3	A	818	827	anti-parallel
Strand 4	A	767	769	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	722	first strand
Strand 2	A	772	774	anti-parallel
Strand 3	A	818	827	anti-parallel
Strand 4	A	669	678	anti-parallel
Strand 5	A	863	868	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	700	first strand
Strand 2	A	799	808	parallel
Strand 3	A	787	792	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	1642	1643	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1478	1481	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1431	first strand
Strand 2	A	1516	1524	anti-parallel
Strand 3	A	951	960	anti-parallel
Strand 4	A	1559	1570	anti-parallel
Strand 5	A	1547	1548	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1431	first strand
Strand 2	A	1516	1524	anti-parallel
Strand 3	A	951	960	anti-parallel
Strand 4	A	1559	1570	anti-parallel
Strand 5	A	1580	1581	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	967	968	first strand
Strand 2	A	988	989	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	991	992	first strand
Strand 2	A	995	996	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1453	1455	first strand
Strand 2	A	1508	1510	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1647	1648	first strand
Strand 2	A	1662	1663	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GNA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNA