Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GNG entry

There are 6 chains in PDB entry 8GNG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	ARG 309
L	ASP 1	ASN 212
H	GLU 1	ARG 224
X	GLY 5	GLU 312
Y	ASP 1	ASN 212
Z	GLU 1	SER 75

There are 41 helices in PDB entry 8GNG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	34	Right-handed alpha
Helix 2	AA2	A	35	38	Right-handed 310
Helix 3	AA3	A	39	58	Right-handed alpha
Helix 4	AA4	A	58	69	Right-handed alpha
Helix 5	AA5	A	73	108	Right-handed alpha
Helix 6	AA6	A	111	116	Right-handed alpha
Helix 7	AA7	A	117	137	Right-handed alpha
Helix 8	AA8	A	137	142	Right-handed alpha
Helix 9	AA9	A	167	172	Right-handed alpha
Helix 10	AB1	A	173	179	Right-handed alpha
Helix 11	AB2	A	186	210	Right-handed alpha
Helix 12	AB3	A	222	259	Right-handed alpha
Helix 13	AB4	A	266	279	Right-handed alpha
Helix 14	AB5	A	279	292	Right-handed alpha
Helix 15	AB6	A	292	307	Right-handed alpha
Helix 16	AB7	L	79	83	Right-handed 310
Helix 17	AB8	L	121	127	Right-handed alpha
Helix 18	AB9	L	183	189	Right-handed alpha
Helix 19	AC1	H	87	91	Right-handed 310
Helix 20	AC2	H	167	169	Right-handed 310
Helix 21	AC3	H	197	199	Right-handed 310
Helix 22	AC4	X	6	34	Right-handed alpha
Helix 23	AC5	X	35	38	Right-handed 310
Helix 24	AC6	X	39	58	Right-handed alpha
Helix 25	AC7	X	58	69	Right-handed alpha
Helix 26	AC8	X	73	108	Right-handed alpha
Helix 27	AC9	X	111	116	Right-handed alpha
Helix 28	AD1	X	117	137	Right-handed alpha
Helix 29	AD2	X	167	172	Right-handed alpha
Helix 30	AD3	X	173	179	Right-handed alpha
Helix 31	AD4	X	186	209	Right-handed alpha
Helix 32	AD5	X	222	259	Right-handed alpha
Helix 33	AD6	X	266	292	Right-handed alpha
Helix 34	AD7	X	292	307	Right-handed alpha
Helix 35	AD8	Y	79	83	Right-handed 310
Helix 36	AD9	Y	121	127	Right-handed alpha
Helix 37	AE1	Y	183	189	Right-handed alpha
Helix 38	AE2	Z	87	91	Right-handed 310
Helix 39	AE3	Z	167	169	Right-handed 310
Helix 40	AE4	Z	197	199	Right-handed 310
Helix 41	AE5	Z	211	214	Right-handed 310

There are 22 sheets in PDB entry 8GNG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	164	165	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	210	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	103	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	103	anti-parallel
Strand 4	H	107	114	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	185	195	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	146	156	anti-parallel
Strand 3	H	185	195	anti-parallel
Strand 4	H	180	182	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	205	210	anti-parallel
Strand 3	H	215	220	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	71	72	first strand
Strand 2	X	164	165	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	7	first strand
Strand 2	Y	19	25	anti-parallel
Strand 3	Y	70	75	anti-parallel
Strand 4	Y	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	10	13	first strand
Strand 2	Y	102	106	parallel
Strand 3	Y	84	90	anti-parallel
Strand 4	Y	33	38	anti-parallel
Strand 5	Y	45	49	anti-parallel
Strand 6	Y	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	114	118	first strand
Strand 2	Y	129	139	anti-parallel
Strand 3	Y	173	182	anti-parallel
Strand 4	Y	159	163	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	153	155	first strand
Strand 2	Y	144	150	anti-parallel
Strand 3	Y	191	198	anti-parallel
Strand 4	Y	201	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	3	6	first strand
Strand 2	Z	18	25	anti-parallel
Strand 3	Z	78	83	anti-parallel
Strand 4	Z	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	10	12	first strand
Strand 2	Z	118	122	parallel
Strand 3	Z	92	103	anti-parallel
Strand 4	Z	34	39	anti-parallel
Strand 5	Z	45	52	anti-parallel
Strand 6	Z	57	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	10	12	first strand
Strand 2	Z	118	122	parallel
Strand 3	Z	92	103	anti-parallel
Strand 4	Z	107	114	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	131	135	first strand
Strand 2	Z	146	156	anti-parallel
Strand 3	Z	185	195	anti-parallel
Strand 4	Z	174	176	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	131	135	first strand
Strand 2	Z	146	156	anti-parallel
Strand 3	Z	185	195	anti-parallel
Strand 4	Z	180	182	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	162	165	first strand
Strand 2	Z	205	210	anti-parallel
Strand 3	Z	215	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GNG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNG