Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GNH entry

There are 5 chains in PDB entry 8GNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	SER 1147
B	ALA 27	SER 1147
C	ALA 27	SER 1147
H	GLN 1	SER 121
L	ILE 2	ARG 107

There are 65 helices in PDB entry 8GNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	337	342	Right-handed alpha
Helix 3	AA3	A	349	353	Right-handed 310
Helix 4	AA4	A	365	370	Right-handed alpha
Helix 5	AA5	A	383	388	Right-handed alpha
Helix 6	AA6	A	616	620	Right-handed 310
Helix 7	AA7	A	621	625	Right-handed 310
Helix 8	AA8	A	630	637	Right-handed alpha
Helix 9	AA9	A	737	743	Right-handed alpha
Helix 10	AB1	A	746	756	Right-handed alpha
Helix 11	AB2	A	760	782	Right-handed alpha
Helix 12	AB3	A	816	826	Right-handed alpha
Helix 13	AB4	A	850	855	Right-handed alpha
Helix 14	AB5	A	866	885	Right-handed alpha
Helix 15	AB6	A	898	910	Right-handed alpha
Helix 16	AB7	A	913	919	Right-handed alpha
Helix 17	AB8	A	919	940	Right-handed alpha
Helix 18	AB9	A	946	966	Right-handed alpha
Helix 19	AC1	A	979	983	Right-handed 310
Helix 20	AC2	A	985	1030	Right-handed alpha
Helix 21	AC3	A	1116	1120	Right-handed 310
Helix 22	AC4	B	294	303	Right-handed alpha
Helix 23	AC5	B	351	353	Right-handed 310
Helix 24	AC6	B	364	370	Right-handed alpha
Helix 25	AC7	B	383	388	Right-handed alpha
Helix 26	AC8	B	405	411	Right-handed 310
Helix 27	AC9	B	438	443	Right-handed alpha
Helix 28	AD1	B	502	505	Right-handed 310
Helix 29	AD2	B	619	624	Right-handed alpha
Helix 30	AD3	B	625	629	Right-handed 310
Helix 31	AD4	B	630	635	Right-handed alpha
Helix 32	AD5	B	737	744	Right-handed alpha
Helix 33	AD6	B	746	754	Right-handed alpha
Helix 34	AD7	B	755	757	Right-handed 310
Helix 35	AD8	B	759	783	Right-handed alpha
Helix 36	AD9	B	816	825	Right-handed alpha
Helix 37	AE1	B	831	839	Right-handed alpha
Helix 38	AE2	B	866	885	Right-handed alpha
Helix 39	AE3	B	886	890	Right-handed 310
Helix 40	AE4	B	897	910	Right-handed alpha
Helix 41	AE5	B	912	916	Right-handed 310
Helix 42	AE6	B	920	941	Right-handed alpha
Helix 43	AE7	B	945	965	Right-handed alpha
Helix 44	AE8	B	966	968	Right-handed 310
Helix 45	AE9	B	976	982	Right-handed alpha
Helix 46	AF1	B	985	1033	Right-handed alpha
Helix 47	AF2	C	294	301	Right-handed alpha
Helix 48	AF3	C	383	390	Right-handed 310
Helix 49	AF4	C	616	618	Right-handed 310
Helix 50	AF5	C	619	624	Right-handed alpha
Helix 51	AF6	C	630	636	Right-handed alpha
Helix 52	AF7	C	746	757	Right-handed alpha
Helix 53	AF8	C	759	783	Right-handed alpha
Helix 54	AF9	C	816	824	Right-handed alpha
Helix 55	AG1	C	835	840	Right-handed 310
Helix 56	AG2	C	866	885	Right-handed alpha
Helix 57	AG3	C	897	908	Right-handed alpha
Helix 58	AG4	C	915	918	Right-handed 310
Helix 59	AG5	C	919	938	Right-handed alpha
Helix 60	AG6	C	945	965	Right-handed alpha
Helix 61	AG7	C	966	968	Right-handed 310
Helix 62	AG8	C	976	982	Right-handed alpha
Helix 63	AG9	C	985	1035	Right-handed alpha
Helix 64	AH1	H	61	64	Right-handed 310
Helix 65	AH2	H	86	90	Right-handed 310

There are 45 sheets in PDB entry 8GNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	565	566	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	268	270	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	243	244	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	289	290	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	314	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	649	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	397	399	anti-parallel
Strand 3	A	511	512	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	691	696	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	665	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	B	787	788	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	1074	1075	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	728	first strand
Strand 2	A	1059	1070	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	858	860	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	188	196	anti-parallel
Strand 3	B	201	202	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	188	196	anti-parallel
Strand 3	B	204	209	anti-parallel
Strand 4	B	224	225	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	238	241	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel
Strand 7	C	42	43	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	394	403	parallel
Strand 3	B	357	358	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	394	403	parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	432	435	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	703	first strand
Strand 2	C	787	789	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	735	first strand
Strand 2	B	859	860	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1082	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1120	1122	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	53	first strand
Strand 2	C	273	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	265	267	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	188	192	anti-parallel
Strand 3	C	204	206	anti-parallel
Strand 4	C	224	225	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	318	first strand
Strand 2	C	593	599	anti-parallel
Strand 3	C	609	612	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	431	437	anti-parallel
Strand 3	C	508	517	anti-parallel
Strand 4	C	392	396	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	431	437	anti-parallel
Strand 3	C	508	517	anti-parallel
Strand 4	C	399	402	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	539	first strand
Strand 2	C	550	551	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	543	first strand
Strand 2	C	546	547	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	576	578	first strand
Strand 2	C	583	585	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	665	667	first strand
Strand 2	C	670	673	anti-parallel
Strand 3	C	693	696	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	719	first strand
Strand 2	C	1059	1074	anti-parallel
Strand 3	C	722	728	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	719	first strand
Strand 2	C	1059	1074	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	736	first strand
Strand 2	C	858	860	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1082	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1120	1125	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	23	25	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	46	50	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	92	97	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	46	50	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	92	97	anti-parallel
Strand 5	H	112	113	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	34	38	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNH