Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GNI entry

There are 3 chains in PDB entry 8GNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 58PRO 549
B
 THR 561GLY 701
C
 MET 1SER 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8GNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 81Right-handed alpha
Helix 2
AA2
A
83 98Right-handed alpha
Helix 3
AA3
A
99 104Right-handed 310
Helix 4
AA4
A
110 122Right-handed alpha
Helix 5
AA5
A
124 133Right-handed alpha
Helix 6
AA6
A
138 143Right-handed alpha
Helix 7
AA7
A
144 151Right-handed alpha
Helix 8
AA8
A
153 163Right-handed alpha
Helix 9
AA9
A
166 172Right-handed alpha
Helix 10
AB1
A
177 193Right-handed alpha
Helix 11
AB2
A
195 205Right-handed alpha
Helix 12
AB3
A
206 214Right-handed alpha
Helix 13
AB4
A
215 217Right-handed 310
Helix 14
AB5
A
219 231Right-handed alpha
Helix 15
AB6
A
239 246Right-handed alpha
Helix 16
AB7
A
254 259Right-handed alpha
Helix 17
AB8
A
263 276Right-handed alpha
Helix 18
AB9
A
280 288Right-handed alpha
Helix 19
AC1
A
295 303Right-handed alpha
Helix 20
AC2
A
304 314Right-handed alpha
Helix 21
AC3
A
326 329Right-handed 310
Helix 22
AC4
A
330 335Right-handed alpha
Helix 23
AC5
A
338 358Right-handed alpha
Helix 24
AC6
A
359 366Right-handed 310
Helix 25
AC7
A
369 376Right-handed alpha
Helix 26
AC8
A
383 398Right-handed alpha
Helix 27
AC9
A
413 424Right-handed alpha
Helix 28
AD1
A
426 428Right-handed 310
Helix 29
AD2
A
429 436Right-handed alpha
Helix 30
AD3
A
439 445Right-handed alpha
Helix 31
AD4
A
447 453Right-handed alpha
Helix 32
AD5
A
459 476Right-handed alpha
Helix 33
AD6
A
486 495Right-handed alpha
Helix 34
AD7
A
496 500Right-handed 310
Helix 35
AD8
A
501 508Right-handed alpha
Helix 36
AD9
A
511 515Right-handed 310
Helix 37
AE1
A
519 526Right-handed alpha
Helix 38
AE2
A
531 543Right-handed alpha
Helix 39
AE3
B
574 587Right-handed alpha
Helix 40
AE4
B
599 604Right-handed 310
Helix 41
AE5
B
606 614Right-handed alpha
Helix 42
AE6
B
625 629Right-handed 310
Helix 43
AE7
B
637 650Right-handed alpha
Helix 44
AE8
B
674 678Right-handed 310
Helix 45
AE9
B
691 696Right-handed alpha
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There are 4 sheets in PDB entry 8GNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 593first strand
Strand 2
B
564 567parallel
Strand 3
B
616 621parallel
Strand 4
B
652 657parallel
Strand 5
B
681 682parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
107 111parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
46 53anti-parallel
Strand 6
C
58 59anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
107 111parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
102 103anti-parallel
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