Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GNJ entry

There are 3 chains in PDB entry 8GNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 58PRO 549
B
 THR 561GLY 701
C
 MET 1SER 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8GNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 69Right-handed alpha
Helix 2
AA2
A
71 80Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
92 104Right-handed alpha
Helix 5
AA5
A
108 118Right-handed alpha
Helix 6
AA6
A
118 123Right-handed alpha
Helix 7
AA7
A
125 132Right-handed alpha
Helix 8
AA8
A
138 151Right-handed alpha
Helix 9
AA9
A
153 163Right-handed alpha
Helix 10
AB1
A
164 173Right-handed alpha
Helix 11
AB2
A
177 191Right-handed alpha
Helix 12
AB3
A
192 194Right-handed 310
Helix 13
AB4
A
195 205Right-handed alpha
Helix 14
AB5
A
208 214Right-handed alpha
Helix 15
AB6
A
219 237Right-handed alpha
Helix 16
AB7
A
240 248Right-handed alpha
Helix 17
AB8
A
254 259Right-handed alpha
Helix 18
AB9
A
263 278Right-handed alpha
Helix 19
AC1
A
283 288Right-handed alpha
Helix 20
AC2
A
292 294Right-handed 310
Helix 21
AC3
A
295 303Right-handed alpha
Helix 22
AC4
A
304 313Right-handed alpha
Helix 23
AC5
A
323 329Right-handed alpha
Helix 24
AC6
A
330 334Right-handed 310
Helix 25
AC7
A
338 356Right-handed alpha
Helix 26
AC8
A
363 368Right-handed alpha
Helix 27
AC9
A
370 379Right-handed alpha
Helix 28
AD1
A
383 398Right-handed alpha
Helix 29
AD2
A
408 412Right-handed 310
Helix 30
AD3
A
413 424Right-handed alpha
Helix 31
AD4
A
426 428Right-handed 310
Helix 32
AD5
A
429 436Right-handed alpha
Helix 33
AD6
A
439 444Right-handed alpha
Helix 34
AD7
A
447 454Right-handed alpha
Helix 35
AD8
A
459 475Right-handed alpha
Helix 36
AD9
A
486 495Right-handed alpha
Helix 37
AE1
A
496 500Right-handed 310
Helix 38
AE2
A
501 509Right-handed alpha
Helix 39
AE3
A
514 518Right-handed 310
Helix 40
AE4
A
519 526Right-handed alpha
Helix 41
AE5
A
531 544Right-handed alpha
Helix 42
AE6
B
574 586Right-handed alpha
Helix 43
AE7
B
605 614Right-handed alpha
Helix 44
AE8
B
637 650Right-handed alpha
Helix 45
AE9
B
672 678Right-handed 310
Helix 46
AF1
B
687 696Right-handed alpha
Helix 47
AF2
C
61 65Right-handed 310
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There are 3 sheets in PDB entry 8GNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
564 567parallel
Strand 3
B
616 620parallel
Strand 4
B
654 657parallel
Strand 5
B
681 682parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
107 111parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
47 53anti-parallel
Strand 6
C
58 59anti-parallel
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