Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GNK entry

There are 3 chains in PDB entry 8GNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 50SER 574
L
 GLU 1LYS 108
H
 GLU 1SER 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8GNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 59Right-handed alpha
Helix 2
AA2
A
68 77Right-handed alpha
Helix 3
AA3
A
82 93Right-handed alpha
Helix 4
AA4
A
93 106Right-handed alpha
Helix 5
AA5
A
111 118Right-handed 310
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
122 154Right-handed alpha
Helix 8
AA8
A
187 195Right-handed alpha
Helix 9
AA9
A
211 231Right-handed alpha
Helix 10
AB1
A
232 240Right-handed alpha
Helix 11
AB2
A
241 244Right-handed 310
Helix 12
AB3
A
245 260Right-handed alpha
Helix 13
AB4
A
263 273Right-handed alpha
Helix 14
AB5
A
277 280Right-handed 310
Helix 15
AB6
A
281 297Right-handed alpha
Helix 16
AB7
A
301 310Right-handed alpha
Helix 17
AB8
A
318 350Right-handed alpha
Helix 18
AB9
A
352 358Right-handed alpha
Helix 19
AC1
A
362 374Right-handed alpha
Helix 20
AC2
A
377 412Right-handed alpha
Helix 21
AC3
A
412 417Right-handed alpha
Helix 22
AC4
A
419 436Right-handed alpha
Helix 23
AC5
A
437 440Right-handed 310
Helix 24
AC6
A
442 454Right-handed alpha
Helix 25
AC7
A
457 473Right-handed alpha
Helix 26
AC8
A
476 486Right-handed alpha
Helix 27
AC9
A
493 502Right-handed alpha
Helix 28
AD1
A
503 519Right-handed alpha
Helix 29
AD2
A
530 546Right-handed alpha
Helix 30
AD3
A
546 559Right-handed alpha
Helix 31
AD4
A
562 572Right-handed alpha
Helix 32
AD5
H
28 32Right-handed 310
Helix 33
AD6
H
87 91Right-handed 310
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There are 6 sheets in PDB entry 8GNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
527 528anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 6first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
104 106parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
46 49first strand
Strand 2
L
34 39anti-parallel
Strand 3
L
86 91anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 97anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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