Analysis of interatomic Contacts of Structural Units in PDB entry:
8GNN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GNN entry

There are 4 chains in PDB entry 8GNN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 266
B
 HIS -3SER 280
C
 GLN 14ASP 274
D
 THR 16ASP 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8GNN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
55 58Right-handed 310
Helix 3
AA3
A
77 84Right-handed alpha
Helix 4
AA4
A
86 93Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
149 157Right-handed alpha
Helix 7
AA7
A
200 204Right-handed 310
Helix 8
AA8
A
219 232Right-handed alpha
Helix 9
AA9
B
9 27Right-handed alpha
Helix 10
AB1
B
61 63Right-handed 310
Helix 11
AB2
B
85 96Right-handed alpha
Helix 12
AB3
B
139 147Right-handed 310
Helix 13
AB4
B
162 175Right-handed alpha
Helix 14
AB5
B
234 243Right-handed alpha
Helix 15
AB6
C
24 33Right-handed alpha
Helix 16
AB7
C
68 70Right-handed 310
Helix 17
AB8
C
86 94Right-handed alpha
Helix 18
AB9
C
148 150Right-handed 310
Helix 19
AC1
C
160 169Right-handed alpha
Helix 20
AC2
C
225 229Right-handed alpha
Helix 21
AC3
C
231 237Right-handed alpha
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There are 6 sheets in PDB entry 8GNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
108 114anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
C
197 203anti-parallel
Strand 7
C
188 193anti-parallel
Strand 8
C
176 181anti-parallel
Strand 9
C
219 224anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
26 32anti-parallel
Strand 4
A
35 41anti-parallel
Strand 5
A
47 53anti-parallel
Strand 6
A
256 262anti-parallel
Strand 7
A
247 252anti-parallel
Strand 8
A
235 240anti-parallel
Strand 9
A
143 148anti-parallel
Strand 10
A
206 208anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
194 199anti-parallel
Strand 5
B
127 134anti-parallel
Strand 6
B
111 119anti-parallel
Strand 7
B
100 107anti-parallel
Strand 8
B
2 7anti-parallel
Strand 9
B
66 70anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
29 34anti-parallel
Strand 4
B
38 44anti-parallel
Strand 5
B
53 59anti-parallel
Strand 6
B
270 277anti-parallel
Strand 7
B
260 267anti-parallel
Strand 8
B
250 256anti-parallel
Strand 9
B
156 159anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 233first strand
Strand 2
B
179 184anti-parallel
Strand 3
B
190 195anti-parallel
Strand 4
B
199 205anti-parallel
Strand 5
C
128 134anti-parallel
Strand 6
C
119 125anti-parallel
Strand 7
C
107 112anti-parallel
Strand 8
C
17 21anti-parallel
Strand 9
C
72 75anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
39 44anti-parallel
Strand 3
C
48 55anti-parallel
Strand 4
C
59 66anti-parallel
Strand 5
C
264 271anti-parallel
Strand 6
C
251 258anti-parallel
Strand 7
C
238 246anti-parallel
Strand 8
C
152 159anti-parallel
Strand 9
C
210 215anti-parallel
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