Analysis of interatomic Contacts of Structural Units in PDB entry:
8GO3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GO3 entry

There are 4 chains in PDB entry 8GO3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 658
B
 LEU 22ALA 283
C
 ALA 21MET 204
D
 SER 11HIS 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8GO3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
14 21Right-handed alpha
Helix 3
AA3
A
23 38Right-handed alpha
Helix 4
AA4
A
42 47Right-handed alpha
Helix 5
AA5
A
53 86Right-handed alpha
Helix 6
AA6
A
95 100Right-handed alpha
Helix 7
AA7
A
101 113Right-handed alpha
Helix 8
AA8
A
115 126Right-handed alpha
Helix 9
AA9
A
126 131Right-handed alpha
Helix 10
AB1
A
138 151Right-handed alpha
Helix 11
AB2
A
173 178Right-handed alpha
Helix 12
AB3
A
186 196Right-handed alpha
Helix 13
AB4
A
197 215Right-handed alpha
Helix 14
AB5
A
226 235Right-handed alpha
Helix 15
AB6
A
236 250Right-handed alpha
Helix 16
AB7
A
250 259Right-handed alpha
Helix 17
AB8
A
273 284Right-handed alpha
Helix 18
AB9
A
284 306Right-handed alpha
Helix 19
AC1
A
312 327Right-handed alpha
Helix 20
AC2
A
330 339Right-handed 310
Helix 21
AC3
A
346 355Right-handed alpha
Helix 22
AC4
A
355 370Right-handed alpha
Helix 23
AC5
A
378 400Right-handed alpha
Helix 24
AC6
A
427 439Right-handed alpha
Helix 25
AC7
A
439 444Right-handed alpha
Helix 26
AC8
A
449 454Right-handed alpha
Helix 27
AC9
A
461 466Right-handed alpha
Helix 28
AD1
A
469 474Right-handed alpha
Helix 29
AD2
A
488 490Right-handed 310
Helix 30
AD3
A
491 498Right-handed alpha
Helix 31
AD4
A
498 522Right-handed alpha
Helix 32
AD5
A
538 542Right-handed 310
Helix 33
AD6
A
562 571Right-handed alpha
Helix 34
AD7
A
592 608Right-handed alpha
Helix 35
AD8
A
610 622Right-handed alpha
Helix 36
AD9
A
625 630Right-handed alpha
Helix 37
AE1
A
639 656Right-handed alpha
Helix 38
AE2
B
34 51Right-handed alpha
Helix 39
AE3
B
55 69Right-handed alpha
Helix 40
AE4
B
94 112Right-handed alpha
Helix 41
AE5
B
214 218Right-handed 310
Helix 42
AE6
B
227 239Right-handed alpha
Helix 43
AE7
B
247 252Right-handed alpha
Helix 44
AE8
B
253 256Right-handed 310
Helix 45
AE9
B
272 279Right-handed alpha
Helix 46
AF1
C
23 51Right-handed alpha
Helix 47
AF2
C
59 64Right-handed alpha
Helix 48
AF3
C
65 92Right-handed alpha
Helix 49
AF4
C
94 125Right-handed alpha
Helix 50
AF5
C
133 141Right-handed alpha
Helix 51
AF6
C
142 167Right-handed alpha
Helix 52
AF7
C
172 195Right-handed alpha
Helix 53
AF8
C
199 204Right-handed alpha
Helix 54
AF9
D
30 39Right-handed alpha
Helix 55
AG1
D
42 65Right-handed alpha
Helix 56
AG2
D
72 76Right-handed 310
Helix 57
AG3
D
77 92Right-handed alpha
Helix 58
AG4
D
92 105Right-handed alpha
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There are 4 sheets in PDB entry 8GO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
635 638anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
127 134parallel
Strand 4
B
137 141anti-parallel
Strand 5
B
148 150anti-parallel
Strand 6
B
264 265anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
221 225parallel
Strand 3
B
201 204anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 185first strand
Strand 2
B
172 175anti-parallel
Strand 3
B
206 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il