Analysis of interatomic Contacts of Structural Units in PDB entry:
8GO9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GO9 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 16 chains in PDB entry 8GO9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	LYS 408
B	VAL 5	PRO 223
C	SER 1	HIS 190
D	VAL 5	PRO 223
E	SER 1	HIS 190
F	PRO 5	LYS 408
G	LEU 344	LEU 344
G	CYS 347	CYS 347
G	GLU 349	GLU 349
G	ILE 352	LEU 353
G	ALA 355	ALA 355
H	LEU 344	LEU 344
H	CYS 347	CYS 347
H	GLU 349	GLU 349
H	ILE 352	LEU 353
H	ALA 355	ALA 355

There are 12 helices in PDB entry 8GO9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed alpha
Helix 2	AA2	A	99	110	Right-handed alpha
Helix 3	AA3	A	393	408	Right-handed alpha
Helix 4	AA4	B	90	94	Right-handed 310
Helix 5	AA5	C	122	128	Right-handed alpha
Helix 6	AA6	C	184	190	Right-handed alpha
Helix 7	AA7	D	90	94	Right-handed 310
Helix 8	AA8	E	122	128	Right-handed alpha
Helix 9	AA9	E	184	190	Right-handed alpha
Helix 10	AB1	F	45	50	Right-handed alpha
Helix 11	AB2	F	99	110	Right-handed alpha
Helix 12	AB3	F	393	408	Right-handed alpha

There are 30 sheets in PDB entry 8GO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	20	23	anti-parallel
Strand 4	A	7	13	anti-parallel
Strand 5	G	350	353	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	165	173	parallel
Strand 3	A	142	152	anti-parallel
Strand 4	A	53	63	anti-parallel
Strand 5	A	78	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	289	291	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	215	223	anti-parallel
Strand 4	A	267	275	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	336	344	parallel
Strand 3	A	317	330	anti-parallel
Strand 4	A	229	243	anti-parallel
Strand 5	A	248	259	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	81	87	anti-parallel
Strand 4	B	71	76	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	117	121	parallel
Strand 3	B	95	99	anti-parallel
Strand 4	B	35	42	anti-parallel
Strand 5	B	48	55	anti-parallel
Strand 6	B	60	63	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	117	121	parallel
Strand 3	B	95	99	anti-parallel
Strand 4	B	35	42	anti-parallel
Strand 5	B	102	103	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	147	155	anti-parallel
Strand 3	B	186	193	anti-parallel
Strand 4	B	173	175	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	147	155	anti-parallel
Strand 3	B	186	193	anti-parallel
Strand 4	B	179	180	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	207	210	anti-parallel
Strand 3	B	215	218	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	104	107	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	46	50	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	86	91	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	119	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	81	87	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	95	99	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	48	55	anti-parallel
Strand 6	D	60	63	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	117	121	parallel
Strand 3	D	95	99	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	102	103	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	147	155	anti-parallel
Strand 3	D	186	193	anti-parallel
Strand 4	D	173	175	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	147	155	anti-parallel
Strand 3	D	186	193	anti-parallel
Strand 4	D	179	180	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	207	210	anti-parallel
Strand 3	D	215	218	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	20	26	anti-parallel
Strand 3	E	71	76	anti-parallel
Strand 4	E	63	68	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	104	107	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	46	50	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	86	91	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	E	130	140	anti-parallel
Strand 3	E	174	183	anti-parallel
Strand 4	E	160	164	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	118	first strand
Strand 2	F	38	43	anti-parallel
Strand 3	F	20	23	anti-parallel
Strand 4	F	7	13	anti-parallel
Strand 5	H	350	353	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	165	173	parallel
Strand 3	F	142	152	anti-parallel
Strand 4	F	53	63	anti-parallel
Strand 5	F	78	86	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	130	first strand
Strand 2	F	289	291	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	189	first strand
Strand 2	F	198	203	anti-parallel
Strand 3	F	215	223	anti-parallel
Strand 4	F	267	275	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	209	first strand
Strand 2	F	336	344	parallel
Strand 3	F	317	330	anti-parallel
Strand 4	F	229	243	anti-parallel
Strand 5	F	248	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GO9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GO9