Analysis of interatomic Contacts of Structural Units in PDB entry:
8GOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GOA entry

There are 4 chains in PDB entry 8GOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 367
B
 MET 1GLU 367
C
 MET 1GLU 367
D
 MET 1GLU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8GOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 19Right-handed 310
Helix 2
AA2
A
20 26Right-handed alpha
Helix 3
AA3
A
27 29Right-handed 310
Helix 4
AA4
A
37 55Right-handed alpha
Helix 5
AA5
A
69 83Right-handed alpha
Helix 6
AA6
A
93 107Right-handed alpha
Helix 7
AA7
A
154 160Right-handed alpha
Helix 8
AA8
A
161 174Right-handed alpha
Helix 9
AA9
A
174 186Right-handed alpha
Helix 10
AB1
A
196 223Right-handed alpha
Helix 11
AB2
A
227 249Right-handed alpha
Helix 12
AB3
A
251 262Right-handed alpha
Helix 13
AB4
A
263 269Right-handed 310
Helix 14
AB5
A
270 286Right-handed alpha
Helix 15
AB6
A
289 303Right-handed alpha
Helix 16
AB7
A
308 313Right-handed 310
Helix 17
AB8
A
317 331Right-handed alpha
Helix 18
AB9
A
334 339Right-handed 310
Helix 19
AC1
A
344 365Right-handed alpha
Helix 20
AC2
B
16 19Right-handed 310
Helix 21
AC3
B
20 26Right-handed alpha
Helix 22
AC4
B
37 55Right-handed alpha
Helix 23
AC5
B
69 83Right-handed alpha
Helix 24
AC6
B
93 107Right-handed alpha
Helix 25
AC7
B
154 160Right-handed alpha
Helix 26
AC8
B
161 186Right-handed alpha
Helix 27
AC9
B
196 224Right-handed alpha
Helix 28
AD1
B
227 249Right-handed alpha
Helix 29
AD2
B
251 262Right-handed alpha
Helix 30
AD3
B
263 267Right-handed 310
Helix 31
AD4
B
270 286Right-handed alpha
Helix 32
AD5
B
289 303Right-handed alpha
Helix 33
AD6
B
309 313Right-handed 310
Helix 34
AD7
B
317 330Right-handed alpha
Helix 35
AD8
B
334 339Right-handed 310
Helix 36
AD9
B
344 366Right-handed alpha
Helix 37
AE1
C
17 19Right-handed 310
Helix 38
AE2
C
20 26Right-handed alpha
Helix 39
AE3
C
37 55Right-handed alpha
Helix 40
AE4
C
69 83Right-handed alpha
Helix 41
AE5
C
93 108Right-handed alpha
Helix 42
AE6
C
154 160Right-handed alpha
Helix 43
AE7
C
161 186Right-handed alpha
Helix 44
AE8
C
196 223Right-handed alpha
Helix 45
AE9
C
227 249Right-handed alpha
Helix 46
AF1
C
251 263Right-handed alpha
Helix 47
AF2
C
264 269Right-handed 310
Helix 48
AF3
C
270 286Right-handed alpha
Helix 49
AF4
C
289 303Right-handed alpha
Helix 50
AF5
C
309 313Right-handed 310
Helix 51
AF6
C
317 330Right-handed alpha
Helix 52
AF7
C
334 339Right-handed 310
Helix 53
AF8
C
344 367Right-handed alpha
Helix 54
AF9
D
16 19Right-handed 310
Helix 55
AG1
D
20 26Right-handed alpha
Helix 56
AG2
D
27 29Right-handed 310
Helix 57
AG3
D
37 55Right-handed alpha
Helix 58
AG4
D
69 83Right-handed alpha
Helix 59
AG5
D
93 107Right-handed alpha
Helix 60
AG6
D
154 160Right-handed alpha
Helix 61
AG7
D
161 186Right-handed alpha
Helix 62
AG8
D
196 224Right-handed alpha
Helix 63
AG9
D
227 249Right-handed alpha
Helix 64
AH1
D
251 260Right-handed alpha
Helix 65
AH2
D
270 286Right-handed alpha
Helix 66
AH3
D
289 303Right-handed alpha
Helix 67
AH4
D
309 313Right-handed 310
Helix 68
AH5
D
317 330Right-handed alpha
Helix 69
AH6
D
334 339Right-handed 310
Helix 70
AH7
D
344 366Right-handed alpha
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There are 7 sheets in PDB entry 8GOA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
C
10 14anti-parallel
Strand 3
C
149 153parallel
Strand 4
C
111 115parallel
Strand 5
C
87 92parallel
Strand 6
C
31 36parallel
Strand 7
C
58 63parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
31 36parallel
Strand 3
A
87 92parallel
Strand 4
A
111 115parallel
Strand 5
A
149 153parallel
Strand 6
A
10 14parallel
Strand 7
C
3 6anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
137 142anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
D
10 14anti-parallel
Strand 3
D
149 153parallel
Strand 4
D
111 115parallel
Strand 5
D
87 92parallel
Strand 6
D
31 36parallel
Strand 7
D
58 63parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
31 36parallel
Strand 3
B
87 92parallel
Strand 4
B
111 115parallel
Strand 5
B
149 153parallel
Strand 6
B
10 14parallel
Strand 7
D
3 6anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
137 140anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
137 142anti-parallel
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