Analysis of interatomic Contacts of Structural Units in PDB entry:
8GOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GOC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 15 chains in PDB entry 8GOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7HIS 350
B
 THR 7HIS 350
C
 THR 7HIS 350
D
 VAL 5PRO 223
E
 SER 1HIS 190
G
 ALA 361ALA 361
G
 LEU 365ASP 368
H
 VAL 5PRO 223
L
 SER 1HIS 190
M
 VAL 5PRO 223
N
 SER 1HIS 190
U
 ALA 361ALA 361
U
 LEU 365ASP 368
V
 ALA 361ALA 361
V
 LEU 365ASP 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8GOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed alpha
Helix 2
AA2
A
99 110Right-handed alpha
Helix 3
AA3
B
45 50Right-handed alpha
Helix 4
AA4
B
99 110Right-handed alpha
Helix 5
AA5
C
46 49Right-handed 310
Helix 6
AA6
C
99 110Right-handed alpha
Helix 7
AA7
D
65 68Right-handed 310
Helix 8
AA8
D
90 94Right-handed 310
Helix 9
AA9
E
122 129Right-handed alpha
Helix 10
AB1
E
184 189Right-handed alpha
Helix 11
AB2
H
65 68Right-handed 310
Helix 12
AB3
H
90 94Right-handed 310
Helix 13
AB4
L
122 129Right-handed alpha
Helix 14
AB5
L
184 189Right-handed alpha
Helix 15
AB6
M
65 68Right-handed 310
Helix 16
AB7
M
90 94Right-handed 310
Helix 17
AB8
N
122 129Right-handed alpha
Helix 18
AB9
N
184 189Right-handed alpha
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There are 46 sheets in PDB entry 8GOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
10 13anti-parallel
Strand 5
G
361 362anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
170 172parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 88first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
165 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
289 291anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 189first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
268 275anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
336 344parallel
Strand 3
A
318 330anti-parallel
Strand 4
A
229 243anti-parallel
Strand 5
A
247 259anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 118first strand
Strand 2
B
38 44anti-parallel
Strand 3
B
19 23anti-parallel
Strand 4
B
10 13anti-parallel
Strand 5
U
361 362anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
170 172parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 88first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
144 152anti-parallel
Strand 4
B
165 167anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
289 291anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 190first strand
Strand 2
B
197 203anti-parallel
Strand 3
B
215 222anti-parallel
Strand 4
B
268 275anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 259first strand
Strand 2
B
229 243anti-parallel
Strand 3
B
318 330anti-parallel
Strand 4
B
336 342anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 118first strand
Strand 2
C
38 44anti-parallel
Strand 3
C
19 23anti-parallel
Strand 4
C
10 13anti-parallel
Strand 5
V
361 362anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 29first strand
Strand 2
C
170 172parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 88first strand
Strand 2
C
53 61anti-parallel
Strand 3
C
147 152anti-parallel
Strand 4
C
165 167anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 130first strand
Strand 2
C
289 291anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 190first strand
Strand 2
C
197 204anti-parallel
Strand 3
C
215 222anti-parallel
Strand 4
C
268 275anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 249first strand
Strand 2
C
229 243anti-parallel
Strand 3
C
252 259anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 249first strand
Strand 2
C
229 243anti-parallel
Strand 3
C
318 330anti-parallel
Strand 4
C
336 342anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 10first strand
Strand 2
D
20 28anti-parallel
Strand 3
D
81 87anti-parallel
Strand 4
D
71 76anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 15first strand
Strand 2
D
117 121parallel
Strand 3
D
95 103anti-parallel
Strand 4
D
35 42anti-parallel
Strand 5
D
49 55anti-parallel
Strand 6
D
60 63anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 15first strand
Strand 2
D
117 121parallel
Strand 3
D
95 103anti-parallel
Strand 4
D
112 113anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 134first strand
Strand 2
D
148 155anti-parallel
Strand 3
D
186 192anti-parallel
Strand 4
D
173 180anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
161 163first strand
Strand 2
D
207 210anti-parallel
Strand 3
D
215 218anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 8first strand
Strand 2
E
20 26anti-parallel
Strand 3
E
71 76anti-parallel
Strand 4
E
63 68anti-parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
103 107parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 50anti-parallel
Strand 6
E
54 55anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
103 107parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
98 99anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
115 119first strand
Strand 2
E
130 140anti-parallel
Strand 3
E
174 183anti-parallel
Strand 4
E
160 164anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
20 28anti-parallel
Strand 3
H
81 87anti-parallel
Strand 4
H
74 76anti-parallel
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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
35 42anti-parallel
Strand 5
H
49 55anti-parallel
Strand 6
H
60 63anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 103anti-parallel
Strand 4
H
112 113anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 134first strand
Strand 2
H
148 155anti-parallel
Strand 3
H
186 192anti-parallel
Strand 4
H
173 180anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 163first strand
Strand 2
H
207 210anti-parallel
Strand 3
H
215 218anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 8first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
45 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
98 99anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
6 10first strand
Strand 2
M
20 28anti-parallel
Strand 3
M
81 87anti-parallel
Strand 4
M
71 76anti-parallel
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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
13 15first strand
Strand 2
M
117 121parallel
Strand 3
M
95 103anti-parallel
Strand 4
M
35 42anti-parallel
Strand 5
M
48 55anti-parallel
Strand 6
M
60 63anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
13 15first strand
Strand 2
M
117 121parallel
Strand 3
M
95 103anti-parallel
Strand 4
M
112 113anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
130 134first strand
Strand 2
M
148 155anti-parallel
Strand 3
M
186 192anti-parallel
Strand 4
M
173 180anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
161 163first strand
Strand 2
M
207 210anti-parallel
Strand 3
M
215 218anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
5 8first strand
Strand 2
N
20 26anti-parallel
Strand 3
N
71 76anti-parallel
Strand 4
N
63 68anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
11 14first strand
Strand 2
N
104 107parallel
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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
54 55first strand
Strand 2
N
46 50anti-parallel
Strand 3
N
34 39anti-parallel
Strand 4
N
86 91anti-parallel
Strand 5
N
98 99anti-parallel
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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
115 119first strand
Strand 2
N
130 140anti-parallel
Strand 3
N
174 183anti-parallel
Strand 4
N
160 164anti-parallel
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