Analysis of interatomic Contacts of Structural Units in PDB entry:
8GOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GOK entry

There is 1 chain in PDB entry 8GOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4THR 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8GOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
37 51Right-handed alpha
Helix 4
AA4
A
58 69Right-handed alpha
Helix 5
AA5
A
71 89Right-handed alpha
Helix 6
AA6
A
93 115Right-handed alpha
Helix 7
AA7
A
118 122Right-handed 310
Helix 8
AA8
A
133 138Right-handed alpha
Helix 9
AA9
A
144 157Right-handed alpha
Helix 10
AB1
A
164 176Right-handed alpha
Helix 11
AB2
A
176 190Right-handed alpha
Helix 12
AB3
A
190 196Right-handed alpha
Helix 13
AB4
A
199 202Right-handed 310
Helix 14
AB5
A
203 210Right-handed alpha
Helix 15
AB6
A
243 251Right-handed alpha
Helix 16
AB7
A
261 268Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8GOK.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
237 240anti-parallel
Strand 3
A
227 234anti-parallel
Strand 4
A
212 216parallel
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