Analysis of interatomic Contacts of Structural Units in PDB entry:
8GOL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GOL entry

There are 4 chains in PDB entry 8GOL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	ASN 360
B	LYS 12	HIS 366
C	LYS 12	ASN 360
D	LYS 12	ASN 360

There are 47 helices in PDB entry 8GOL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	87	Right-handed alpha
Helix 2	AA2	A	94	102	Right-handed alpha
Helix 3	AA3	A	143	151	Right-handed alpha
Helix 4	AA4	A	170	176	Right-handed alpha
Helix 5	AA5	A	185	201	Right-handed alpha
Helix 6	AA6	A	210	222	Right-handed alpha
Helix 7	AA7	A	263	268	Right-handed alpha
Helix 8	AA8	A	269	272	Right-handed 310
Helix 9	AA9	A	291	314	Right-handed alpha
Helix 10	AB1	A	324	327	Right-handed 310
Helix 11	AB2	A	334	338	Right-handed 310
Helix 12	AB3	A	340	355	Right-handed alpha
Helix 13	AB4	B	82	87	Right-handed alpha
Helix 14	AB5	B	94	102	Right-handed alpha
Helix 15	AB6	B	143	151	Right-handed alpha
Helix 16	AB7	B	170	177	Right-handed alpha
Helix 17	AB8	B	185	201	Right-handed alpha
Helix 18	AB9	B	210	222	Right-handed alpha
Helix 19	AC1	B	263	268	Right-handed alpha
Helix 20	AC2	B	269	272	Right-handed 310
Helix 21	AC3	B	291	314	Right-handed alpha
Helix 22	AC4	B	324	327	Right-handed 310
Helix 23	AC5	B	334	338	Right-handed 310
Helix 24	AC6	B	340	355	Right-handed alpha
Helix 25	AC7	C	82	87	Right-handed alpha
Helix 26	AC8	C	94	102	Right-handed alpha
Helix 27	AC9	C	143	151	Right-handed alpha
Helix 28	AD1	C	170	176	Right-handed alpha
Helix 29	AD2	C	185	201	Right-handed alpha
Helix 30	AD3	C	210	222	Right-handed alpha
Helix 31	AD4	C	263	268	Right-handed alpha
Helix 32	AD5	C	269	272	Right-handed 310
Helix 33	AD6	C	291	314	Right-handed alpha
Helix 34	AD7	C	324	327	Right-handed 310
Helix 35	AD8	C	334	338	Right-handed 310
Helix 36	AD9	C	340	355	Right-handed alpha
Helix 37	AE1	D	82	87	Right-handed alpha
Helix 38	AE2	D	94	102	Right-handed alpha
Helix 39	AE3	D	143	151	Right-handed alpha
Helix 40	AE4	D	170	177	Right-handed alpha
Helix 41	AE5	D	185	201	Right-handed alpha
Helix 42	AE6	D	210	222	Right-handed alpha
Helix 43	AE7	D	263	268	Right-handed alpha
Helix 44	AE8	D	269	272	Right-handed 310
Helix 45	AE9	D	291	314	Right-handed alpha
Helix 46	AF1	D	334	338	Right-handed 310
Helix 47	AF2	D	340	355	Right-handed alpha

There are 17 sheets in PDB entry 8GOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	274	279	parallel
Strand 3	A	225	231	parallel
Strand 4	A	203	208	parallel
Strand 5	A	72	75	parallel
Strand 6	A	106	110	parallel
Strand 7	A	57	64	anti-parallel
Strand 8	A	15	25	anti-parallel
Strand 9	B	15	25	anti-parallel
Strand 10	B	57	64	anti-parallel
Strand 11	B	106	110	anti-parallel
Strand 12	B	72	75	parallel
Strand 13	B	203	208	parallel
Strand 14	B	225	231	parallel
Strand 15	B	274	279	parallel
Strand 16	B	317	322	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	51	54	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	B	138	139	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	132	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	B	124	125	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	260	262	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	51	54	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	132	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	260	262	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	25	first strand
Strand 2	C	57	64	anti-parallel
Strand 3	C	106	110	anti-parallel
Strand 4	C	72	75	parallel
Strand 5	C	203	208	parallel
Strand 6	C	225	231	parallel
Strand 7	C	274	279	parallel
Strand 8	C	317	322	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	51	54	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	132	133	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	260	262	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	25	first strand
Strand 2	D	57	64	anti-parallel
Strand 3	D	106	110	anti-parallel
Strand 4	D	72	75	parallel
Strand 5	D	203	208	parallel
Strand 6	D	225	231	parallel
Strand 7	D	274	279	parallel
Strand 8	D	317	322	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	51	54	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	132	133	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	260	262	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GOL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GOL