Analysis of interatomic Contacts of Structural Units in PDB entry:
8GOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GOP entry

There are 2 chains in PDB entry 8GOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 2ASP 245
A
 ALA 2PRO 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8GOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
83 87Right-handed 310
Helix 2
AA2
B
117 121Right-handed 310
Helix 3
AA3
B
132 140Right-handed alpha
Helix 4
AA4
B
199 203Right-handed alpha
Helix 5
AA5
A
84 88Right-handed 310
Helix 6
AA6
A
185 189Right-handed 310
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There are 10 sheets in PDB entry 8GOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
65 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
44 50anti-parallel
Strand 6
B
53 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
110 115parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
105 106anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
189 198anti-parallel
Strand 3
B
141 151anti-parallel
Strand 4
B
125 130anti-parallel
Strand 5
A
121 127anti-parallel
Strand 6
A
134 139anti-parallel
Strand 7
A
171 178anti-parallel
Strand 8
A
156 157anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
189 198anti-parallel
Strand 3
B
141 151anti-parallel
Strand 4
B
125 130anti-parallel
Strand 5
A
121 127anti-parallel
Strand 6
A
134 139anti-parallel
Strand 7
A
171 178anti-parallel
Strand 8
A
161 164anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
156 162anti-parallel
Strand 3
B
208 215anti-parallel
Strand 4
B
234 241anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
25 27anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
107 112parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
47 53anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
107 112parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
102 103anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
65 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il