Analysis of interatomic Contacts of Structural Units in PDB entry:
8GP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GP3 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8GP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	SER 368
V	GLU 343	GLU 343
V	GLU 345	GLU 345
V	PHE 349	HIS 350
B	THR 6	SER 368
U	GLU 343	GLU 343
U	GLU 345	GLU 345
U	PHE 349	HIS 350
H	VAL 5	PRO 223
I	VAL 5	PRO 223
L	SER 1	HIS 190
M	SER 1	HIS 190

There are 14 helices in PDB entry 8GP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	109	Right-handed alpha
Helix 2	AA2	A	159	161	Right-handed 310
Helix 3	AA3	A	277	282	Right-handed 310
Helix 4	AA4	B	98	109	Right-handed alpha
Helix 5	AA5	B	159	161	Right-handed 310
Helix 6	AA6	B	278	282	Right-handed 310
Helix 7	AA7	H	90	94	Right-handed 310
Helix 8	AA8	I	90	94	Right-handed 310
Helix 9	AA9	L	80	84	Right-handed 310
Helix 10	AB1	L	123	129	Right-handed alpha
Helix 11	AB2	L	183	190	Right-handed alpha
Helix 12	AB3	M	80	84	Right-handed 310
Helix 13	AB4	M	123	129	Right-handed alpha
Helix 14	AB5	M	183	190	Right-handed alpha

There are 30 sheets in PDB entry 8GP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	19	22	anti-parallel
Strand 4	A	7	12	anti-parallel
Strand 5	V	345	348	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	163	171	parallel
Strand 3	A	140	150	anti-parallel
Strand 4	A	53	64	anti-parallel
Strand 5	A	74	85	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	163	171	parallel
Strand 3	A	140	150	anti-parallel
Strand 4	A	127	129	anti-parallel
Strand 5	A	288	290	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	214	221	anti-parallel
Strand 4	A	267	274	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	343	351	parallel
Strand 3	A	316	329	anti-parallel
Strand 4	A	228	242	anti-parallel
Strand 5	A	246	258	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	19	22	anti-parallel
Strand 4	B	7	12	anti-parallel
Strand 5	U	345	348	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	169	171	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	85	first strand
Strand 2	B	53	64	anti-parallel
Strand 3	B	140	150	anti-parallel
Strand 4	B	163	166	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	85	first strand
Strand 2	B	53	64	anti-parallel
Strand 3	B	140	150	anti-parallel
Strand 4	B	127	129	anti-parallel
Strand 5	B	288	290	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	197	203	anti-parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	267	274	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	343	351	parallel
Strand 3	B	316	329	anti-parallel
Strand 4	B	228	242	anti-parallel
Strand 5	B	246	258	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	117	121	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	35	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	117	121	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	112	113	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	147	155	anti-parallel
Strand 3	H	186	193	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	147	155	anti-parallel
Strand 3	H	186	193	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	206	210	anti-parallel
Strand 3	H	215	217	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	10	first strand
Strand 2	I	20	28	anti-parallel
Strand 3	I	81	87	anti-parallel
Strand 4	I	71	76	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	15	first strand
Strand 2	I	117	121	parallel
Strand 3	I	95	103	anti-parallel
Strand 4	I	35	42	anti-parallel
Strand 5	I	48	55	anti-parallel
Strand 6	I	60	63	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	15	first strand
Strand 2	I	117	121	parallel
Strand 3	I	95	103	anti-parallel
Strand 4	I	112	113	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	134	first strand
Strand 2	I	147	155	anti-parallel
Strand 3	I	186	193	anti-parallel
Strand 4	I	174	175	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	134	first strand
Strand 2	I	147	155	anti-parallel
Strand 3	I	186	193	anti-parallel
Strand 4	I	179	180	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	164	first strand
Strand 2	I	206	210	anti-parallel
Strand 3	I	215	217	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	8	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	7	8	first strand
Strand 2	M	20	25	anti-parallel
Strand 3	M	71	76	anti-parallel
Strand 4	M	63	68	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	14	first strand
Strand 2	M	103	107	parallel
Strand 3	M	86	91	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	45	47	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	49	50	first strand
Strand 2	M	54	55	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	115	119	first strand
Strand 2	M	131	140	anti-parallel
Strand 3	M	174	182	anti-parallel
Strand 4	M	160	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GP3