Analysis of interatomic Contacts of Structural Units in PDB entry:
8GP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GP5 entry

There are 3 chains in PDB entry 8GP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLN 1SER 113
F
 ASP 1LYS 107
X
 ASN 33GLN 653
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8GP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
96 98Right-handed 310
Helix 2
AA2
X
99 114Right-handed alpha
Helix 3
AA3
X
335 351Right-handed alpha
Helix 4
AA4
X
475 479Right-handed 310
Helix 5
AA5
X
529 536Right-handed alpha
Helix 6
AA6
X
572 596Right-handed alpha
Helix 7
AA7
X
618 625Right-handed alpha
Helix 8
AA8
X
627 636Right-handed alpha
Helix 9
AA9
X
638 653Right-handed alpha
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There are 13 sheets in PDB entry 8GP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
77 82anti-parallel
Strand 4
E
67 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
110 111parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 40first strand
Strand 2
E
44 51anti-parallel
Strand 3
E
57 59anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
95 99first strand
Strand 2
E
100 100anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 7first strand
Strand 2
F
19 24anti-parallel
Strand 3
F
70 75anti-parallel
Strand 4
F
62 67anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
102 105parallel
Strand 3
F
84 90anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
45 48anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
495 499first strand
Strand 2
X
35 39anti-parallel
Strand 3
X
604 609anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
45 47first strand
Strand 2
X
486 491anti-parallel
Strand 3
X
223 228anti-parallel
Strand 4
X
242 245anti-parallel
Strand 5
X
83 85anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
53 55first strand
Strand 2
X
216 218anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
91 94first strand
Strand 2
X
236 239anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
259 261first strand
Strand 2
X
445 455anti-parallel
Strand 3
X
284 296anti-parallel
Strand 4
X
466 470first strand
Strand 5
X
359 361parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
271 273first strand
Strand 2
X
284 296anti-parallel
Strand 3
X
445 455anti-parallel
Strand 4
X
331 334first strand
Strand 5
X
413 416anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
374 378first strand
Strand 2
X
381 385anti-parallel
Strand 3
X
418 420anti-parallel
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