Analysis of interatomic Contacts of Structural Units in PDB entry:
8GP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GP6 entry

There are 2 chains in PDB entry 8GP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 8ASN 268
A
 LEU 7CYS 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8GP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
20 25Right-handed alpha
Helix 2
AA2
B
26 29Right-handed 310
Helix 3
AA3
B
30 35Right-handed alpha
Helix 4
AA4
B
49 51Right-handed 310
Helix 5
AA5
B
52 60Right-handed alpha
Helix 6
AA6
B
84 89Right-handed alpha
Helix 7
AA7
B
120 125Right-handed alpha
Helix 8
AA8
B
127 136Right-handed alpha
Helix 9
AA9
B
141 154Right-handed alpha
Helix 10
AB1
B
155 158Right-handed 310
Helix 11
AB2
B
159 180Right-handed alpha
Helix 12
AB3
B
183 197Right-handed alpha
Helix 13
AB4
B
198 210Right-handed alpha
Helix 14
AB5
B
213 221Right-handed alpha
Helix 15
AB6
B
227 237Right-handed alpha
Helix 16
AB7
B
240 244Right-handed 310
Helix 17
AB8
B
245 251Right-handed alpha
Helix 18
AB9
B
252 256Right-handed 310
Helix 19
AC1
B
257 265Right-handed alpha
Helix 20
AC2
A
30 34Right-handed 310
Helix 21
AC3
A
67 72Right-handed alpha
Helix 22
AC4
A
75 80Right-handed alpha
Helix 23
AC5
A
108 119Right-handed alpha
Helix 24
AC6
A
139 149Right-handed alpha
Helix 25
AC7
A
156 160Right-handed 310
Helix 26
AC8
A
168 179Right-handed alpha
Helix 27
AC9
A
182 190Right-handed alpha
Helix 28
AD1
A
193 208Right-handed alpha
Helix 29
AD2
A
210 221Right-handed alpha
Helix 30
AD3
A
225 239Right-handed alpha
Helix 31
AD4
A
242 246Right-handed 310
Helix 32
AD5
A
260 267Right-handed 310
Helix 33
AD6
A
276 280Right-handed 310
Helix 34
AD7
A
281 291Right-handed alpha
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There are 5 sheets in PDB entry 8GP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
63 67anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
113 116anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 14first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
35 40anti-parallel
Strand 4
A
100 102anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
82 85anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
123 127anti-parallel
Strand 3
A
89 92anti-parallel
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