Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GPB entry

There is 1 chain in PDB entry 8GPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11PRO 842
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8GPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
20 38Right-handed alpha
Helix 2
H2
A
47 78Right-handed alpha
Helix 3
H3
A
94 102Right-handed alpha
Helix 4
H4
A
104 115Right-handed alpha
Helix 5
H5
A
118 124Right-handed alpha
Helix 6
H6
A
134 150Right-handed alpha
Helix 7
H7
A
261 274Right-handed alpha
Helix 8
H8
A
289 314Right-handed alpha
Helix 9
H8B
A
328 333Right-handed alpha
Helix 10
H9
A
344 355Right-handed alpha
Helix 11
H10
A
360 372Right-handed alpha
Helix 12
H11
A
388 396Right-handed alpha
Helix 13
H12
A
396 418Right-handed alpha
Helix 14
H13
A
420 429Right-handed alpha
Helix 15
H14
A
440 448Right-handed alpha
Helix 16
H15
A
456 466Right-handed alpha
Helix 17
15B
A
468 475Right-handed alpha
Helix 18
PI
A
488 495Right-handed pi
Helix 19
H16
A
496 508Right-handed alpha
Helix 20
3TA
A
509 514Right-handed 310
Helix 21
3TB
A
514 525Right-handed 310
Helix 22
H17
A
527 553Right-handed alpha
Helix 23
H18
A
575 593Right-handed alpha
Helix 24
H19
A
613 631Right-handed alpha
Helix 25
H20
A
649 657Right-handed alpha
Helix 26
H21
A
676 684Right-handed alpha
Helix 27
H22
A
695 704Right-handed alpha
Helix 28
H23
A
714 725Right-handed alpha
Helix 29
H24
A
728 735Right-handed alpha
Helix 30
H25
A
735 747Right-handed alpha
Helix 31
H26
A
758 768Right-handed alpha
Helix 32
H27
A
776 792Right-handed alpha
Helix 33
H28
A
793 806Right-handed alpha
Helix 34
H29
A
812 825Right-handed alpha
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There are 7 sheets in PDB entry 8GPB. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6, S7,

There are 9 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
222 232anti-parallel
Strand 3
A
237 247anti-parallel
Strand 4
A
153 160parallel
Strand 5
A
81 86parallel
Strand 6
A
332 339parallel
Strand 7
A
371 376parallel
Strand 8
A
451 454parallel
Strand 9
A
478 484parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
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There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
276 279parallel
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There are 2 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 209first strand
Strand 2
A
212 223anti-parallel
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There are 2 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
129 131anti-parallel
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There are 3 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 389first strand
Strand 2
A
437 441anti-parallel
Strand 3
A
430 432anti-parallel
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There are 6 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 645first strand
Strand 2
A
600 608parallel
Strand 3
A
562 570parallel
Strand 4
A
661 665parallel
Strand 5
A
687 691parallel
Strand 6
A
709 711parallel
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