Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GPJ entry

There are 12 chains in PDB entry 8GPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 0	VAL 129
C	ASP 0	VAL 106
D	GLN 0	VAL 129
E	ASP 0	VAL 106
H	GLN 0	VAL 129
L	ASP 0	VAL 106
U	LEU 520	LEU 660
V	LEU 520	LEU 660
W	LEU 520	LEU 660
X	ASN 33	ARG 504
Y	ASN 33	ARG 504
Z	ASN 33	ARG 504

There are 41 helices in PDB entry 8GPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	63	Right-handed 310
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	D	60	63	Right-handed 310
Helix 4	AA4	D	89	93	Right-handed 310
Helix 5	AA5	H	60	63	Right-handed 310
Helix 6	AA6	H	89	93	Right-handed 310
Helix 7	AA7	U	529	534	Right-handed alpha
Helix 8	AA8	U	536	543	Right-handed alpha
Helix 9	AA9	U	569	595	Right-handed alpha
Helix 10	AB1	U	618	626	Right-handed alpha
Helix 11	AB2	U	627	635	Right-handed alpha
Helix 12	AB3	U	638	660	Right-handed alpha
Helix 13	AB4	V	529	534	Right-handed alpha
Helix 14	AB5	V	536	544	Right-handed alpha
Helix 15	AB6	V	569	596	Right-handed alpha
Helix 16	AB7	V	618	625	Right-handed alpha
Helix 17	AB8	V	627	635	Right-handed alpha
Helix 18	AB9	V	638	660	Right-handed alpha
Helix 19	AC1	W	529	534	Right-handed alpha
Helix 20	AC2	W	536	544	Right-handed alpha
Helix 21	AC3	W	569	596	Right-handed alpha
Helix 22	AC4	W	618	625	Right-handed alpha
Helix 23	AC5	W	627	635	Right-handed alpha
Helix 24	AC6	W	638	660	Right-handed alpha
Helix 25	AC7	X	98	117	Right-handed alpha
Helix 26	AC8	X	195	197	Right-handed 310
Helix 27	AC9	X	335	353	Right-handed alpha
Helix 28	AD1	X	368	373	Right-handed alpha
Helix 29	AD2	X	476	484	Right-handed alpha
Helix 30	AD3	Y	94	97	Right-handed 310
Helix 31	AD4	Y	98	117	Right-handed alpha
Helix 32	AD5	Y	122	126	Right-handed 310
Helix 33	AD6	Y	335	350	Right-handed alpha
Helix 34	AD7	Y	368	373	Right-handed alpha
Helix 35	AD8	Y	474	479	Right-handed 310
Helix 36	AD9	Z	67	73	Right-handed alpha
Helix 37	AE1	Z	94	97	Right-handed 310
Helix 38	AE2	Z	98	117	Right-handed alpha
Helix 39	AE3	Z	336	353	Right-handed alpha
Helix 40	AE4	Z	368	373	Right-handed alpha
Helix 41	AE5	Z	476	481	Right-handed alpha

There are 45 sheets in PDB entry 8GPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	17	24	anti-parallel
Strand 3	A	80	85	anti-parallel
Strand 4	A	66	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	125	128	parallel
Strand 3	A	94	102	anti-parallel
Strand 4	A	32	40	anti-parallel
Strand 5	A	44	52	anti-parallel
Strand 6	A	55	58	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	125	128	parallel
Strand 3	A	94	102	anti-parallel
Strand 4	A	120	121	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	115	116	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	63	67	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	102	105	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	102	105	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	66	71	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	58	first strand
Strand 2	D	49	52	anti-parallel
Strand 3	D	32	39	anti-parallel
Strand 4	D	94	102	anti-parallel
Strand 5	D	120	121	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	58	first strand
Strand 2	D	49	52	anti-parallel
Strand 3	D	32	39	anti-parallel
Strand 4	D	94	102	anti-parallel
Strand 5	D	125	127	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	81	85	anti-parallel
Strand 4	H	66	69	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	58	first strand
Strand 2	H	44	52	anti-parallel
Strand 3	H	32	40	anti-parallel
Strand 4	H	94	102	anti-parallel
Strand 5	H	120	121	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	58	first strand
Strand 2	H	44	52	anti-parallel
Strand 3	H	32	40	anti-parallel
Strand 4	H	94	102	anti-parallel
Strand 5	H	125	127	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	63	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	603	609	first strand
Strand 2	Y	35	47	anti-parallel
Strand 3	Y	487	499	anti-parallel
Strand 4	Y	223	228	anti-parallel
Strand 5	Y	242	245	anti-parallel
Strand 6	Y	84	86	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	603	609	first strand
Strand 2	Z	35	47	anti-parallel
Strand 3	Z	486	498	anti-parallel
Strand 4	Z	223	228	anti-parallel
Strand 5	Z	242	245	anti-parallel
Strand 6	Z	83	86	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	35	47	first strand
Strand 2	X	486	499	anti-parallel
Strand 3	X	223	228	anti-parallel
Strand 4	X	242	245	anti-parallel
Strand 5	X	84	85	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	53	55	first strand
Strand 2	X	216	218	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	91	94	first strand
Strand 2	X	236	239	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	130	132	first strand
Strand 2	X	154	162	anti-parallel
Strand 3	X	169	177	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	181	183	first strand
Strand 2	X	191	193	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	200	203	first strand
Strand 2	X	432	435	parallel
Strand 3	X	423	424	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	260	261	first strand
Strand 2	X	443	456	anti-parallel
Strand 3	X	284	298	anti-parallel
Strand 4	X	465	470	first strand
Strand 5	X	358	361	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	271	273	first strand
Strand 2	X	284	298	anti-parallel
Strand 3	X	443	456	anti-parallel
Strand 4	X	330	334	first strand
Strand 5	X	413	421	anti-parallel
Strand 6	X	381	385	anti-parallel
Strand 7	X	374	378	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	301	308	first strand
Strand 2	X	316	323	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	53	55	first strand
Strand 2	Y	216	218	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	91	93	first strand
Strand 2	Y	237	239	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	130	132	first strand
Strand 2	Y	154	162	anti-parallel
Strand 3	Y	169	177	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	181	183	first strand
Strand 2	Y	191	193	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	200	203	first strand
Strand 2	Y	432	435	parallel
Strand 3	Y	423	424	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	259	261	first strand
Strand 2	Y	443	456	anti-parallel
Strand 3	Y	284	298	anti-parallel
Strand 4	Y	465	470	first strand
Strand 5	Y	358	361	parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	271	273	first strand
Strand 2	Y	284	298	anti-parallel
Strand 3	Y	443	456	anti-parallel
Strand 4	Y	329	334	first strand
Strand 5	Y	413	421	anti-parallel
Strand 6	Y	381	385	anti-parallel
Strand 7	Y	374	378	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	302	308	first strand
Strand 2	Y	316	322	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	53	55	first strand
Strand 2	Z	216	218	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	91	93	first strand
Strand 2	Z	237	239	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	130	133	first strand
Strand 2	Z	154	162	anti-parallel
Strand 3	Z	169	177	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	181	183	first strand
Strand 2	Z	191	193	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	200	203	first strand
Strand 2	Z	432	435	parallel
Strand 3	Z	423	424	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	259	261	first strand
Strand 2	Z	443	456	anti-parallel
Strand 3	Z	284	298	anti-parallel
Strand 4	Z	465	470	first strand
Strand 5	Z	358	361	parallel

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There are 7 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	271	273	first strand
Strand 2	Z	284	298	anti-parallel
Strand 3	Z	443	456	anti-parallel
Strand 4	Z	330	334	first strand
Strand 5	Z	413	421	anti-parallel
Strand 6	Z	381	385	anti-parallel
Strand 7	Z	374	378	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	304	308	first strand
Strand 2	Z	316	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPJ