Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GPP entry

There are 3 chains in PDB entry 8GPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2SER 190
B
 PRO 2SER 190
C
 HIS 1SER 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 8GPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 170Right-handed alpha
Helix 2
AA2
A
185 189Right-handed 310
Helix 3
AA3
B
145 170Right-handed alpha
Helix 4
AA4
B
185 189Right-handed 310
Helix 5
AA5
C
145 170Right-handed alpha
Helix 6
AA6
C
185 189Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 8GPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
24 31parallel
Strand 3
A
42 52parallel
Strand 4
A
71 74parallel
Strand 5
A
90 91parallel
Strand 6
A
108 109parallel
Strand 7
A
126 127parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
102 103parallel
Strand 3
A
85 87parallel
Strand 4
A
63 65parallel
Strand 5
A
42 52parallel
Strand 6
A
24 31parallel
Strand 7
A
3 5parallel
Strand 8
B
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
36 37parallel
Strand 3
A
57 58parallel
Strand 4
A
79 80parallel
Strand 5
A
96 97parallel
Strand 6
A
114 115parallel
Strand 7
A
131 134parallel
Strand 8
A
139 143anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
C
3 5anti-parallel
Strand 3
C
24 31parallel
Strand 4
C
42 52parallel
Strand 5
C
63 65parallel
Strand 6
C
85 87parallel
Strand 7
C
102 103parallel
Strand 8
C
120 121parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
24 31parallel
Strand 3
C
42 52parallel
Strand 4
C
71 74parallel
Strand 5
C
90 91parallel
Strand 6
C
108 109parallel
Strand 7
C
126 127parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
24 31parallel
Strand 3
B
42 52parallel
Strand 4
B
71 74parallel
Strand 5
B
90 91parallel
Strand 6
B
108 109parallel
Strand 7
B
126 127parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
102 103parallel
Strand 3
B
85 87parallel
Strand 4
B
63 65parallel
Strand 5
B
42 52parallel
Strand 6
B
24 31parallel
Strand 7
B
3 5parallel
Strand 8
C
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
36 37parallel
Strand 3
B
57 58parallel
Strand 4
B
79 80parallel
Strand 5
B
96 97parallel
Strand 6
B
114 115parallel
Strand 7
B
131 134parallel
Strand 8
B
139 143anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
36 37parallel
Strand 3
C
57 58parallel
Strand 4
C
79 80parallel
Strand 5
C
96 97parallel
Strand 6
C
114 115parallel
Strand 7
C
131 134parallel
Strand 8
C
139 143anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il