Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GPR entry

There are 4 chains in PDB entry 8GPR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	ILE 820
B	GLN 1	ILE 820
C	GLN 1	ILE 820
D	GLN 1	ILE 820

There are106 helices in PDB entry 8GPR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	34	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	119	135	Right-handed alpha
Helix 5	AA5	A	147	152	Right-handed alpha
Helix 6	AA6	A	152	158	Right-handed alpha
Helix 7	AA7	A	159	161	Right-handed 310
Helix 8	AA8	A	174	176	Right-handed 310
Helix 9	AA9	A	177	188	Right-handed alpha
Helix 10	AB1	A	198	213	Right-handed alpha
Helix 11	AB2	A	253	270	Right-handed alpha
Helix 12	AB3	A	284	304	Right-handed alpha
Helix 13	AB4	A	321	332	Right-handed alpha
Helix 14	AB5	A	443	456	Right-handed alpha
Helix 15	AB6	A	481	488	Right-handed alpha
Helix 16	AB7	A	501	506	Right-handed alpha
Helix 17	AB8	A	541	564	Right-handed alpha
Helix 18	AB9	A	612	646	Right-handed alpha
Helix 19	AC1	A	653	658	Right-handed alpha
Helix 20	AC2	A	669	678	Right-handed alpha
Helix 21	AC3	A	680	696	Right-handed alpha
Helix 22	AC4	A	701	712	Right-handed alpha
Helix 23	AC5	A	720	730	Right-handed alpha
Helix 24	AC6	A	755	770	Right-handed alpha
Helix 25	AC7	A	770	781	Right-handed alpha
Helix 26	AC8	A	799	803	Right-handed 310
Helix 27	AC9	A	804	817	Right-handed alpha
Helix 28	AD1	B	18	34	Right-handed alpha
Helix 29	AD2	B	57	69	Right-handed alpha
Helix 30	AD3	B	78	92	Right-handed alpha
Helix 31	AD4	B	119	135	Right-handed alpha
Helix 32	AD5	B	145	150	Right-handed alpha
Helix 33	AD6	B	152	158	Right-handed alpha
Helix 34	AD7	B	159	161	Right-handed 310
Helix 35	AD8	B	174	177	Right-handed 310
Helix 36	AD9	B	178	188	Right-handed alpha
Helix 37	AE1	B	198	212	Right-handed alpha
Helix 38	AE2	B	253	269	Right-handed alpha
Helix 39	AE3	B	285	304	Right-handed alpha
Helix 40	AE4	B	321	332	Right-handed alpha
Helix 41	AE5	B	437	439	Right-handed 310
Helix 42	AE6	B	443	457	Right-handed alpha
Helix 43	AE7	B	481	488	Right-handed alpha
Helix 44	AE8	B	532	536	Right-handed 310
Helix 45	AE9	B	541	557	Right-handed alpha
Helix 46	AF1	B	557	564	Right-handed alpha
Helix 47	AF2	B	612	646	Right-handed alpha
Helix 48	AF3	B	669	678	Right-handed alpha
Helix 49	AF4	B	680	691	Right-handed alpha
Helix 50	AF5	B	701	712	Right-handed alpha
Helix 51	AF6	B	720	728	Right-handed alpha
Helix 52	AF7	B	753	769	Right-handed alpha
Helix 53	AF8	B	770	780	Right-handed alpha
Helix 54	AF9	B	803	814	Right-handed alpha
Helix 55	AG1	C	18	34	Right-handed alpha
Helix 56	AG2	C	55	69	Right-handed alpha
Helix 57	AG3	C	78	91	Right-handed alpha
Helix 58	AG4	C	92	94	Right-handed 310
Helix 59	AG5	C	119	135	Right-handed alpha
Helix 60	AG6	C	145	152	Right-handed 310
Helix 61	AG7	C	174	176	Right-handed 310
Helix 62	AG8	C	177	188	Right-handed alpha
Helix 63	AG9	C	198	212	Right-handed alpha
Helix 64	AH1	C	254	270	Right-handed alpha
Helix 65	AH2	C	284	304	Right-handed alpha
Helix 66	AH3	C	322	332	Right-handed alpha
Helix 67	AH4	C	443	457	Right-handed alpha
Helix 68	AH5	C	481	488	Right-handed alpha
Helix 69	AH6	C	501	506	Right-handed alpha
Helix 70	AH7	C	542	548	Right-handed alpha
Helix 71	AH8	C	549	564	Right-handed alpha
Helix 72	AH9	C	612	646	Right-handed alpha
Helix 73	AI1	C	652	658	Right-handed alpha
Helix 74	AI2	C	669	678	Right-handed alpha
Helix 75	AI3	C	680	696	Right-handed alpha
Helix 76	AI4	C	701	712	Right-handed alpha
Helix 77	AI5	C	720	730	Right-handed alpha
Helix 78	AI6	C	755	770	Right-handed alpha
Helix 79	AI7	C	770	781	Right-handed alpha
Helix 80	AI8	C	799	803	Right-handed 310
Helix 81	AI9	C	804	820	Right-handed alpha
Helix 82	AJ1	D	19	34	Right-handed alpha
Helix 83	AJ2	D	54	69	Right-handed alpha
Helix 84	AJ3	D	78	92	Right-handed alpha
Helix 85	AJ4	D	119	134	Right-handed alpha
Helix 86	AJ5	D	145	162	Right-handed alpha
Helix 87	AJ6	D	178	188	Right-handed alpha
Helix 88	AJ7	D	198	213	Right-handed alpha
Helix 89	AJ8	D	253	269	Right-handed alpha
Helix 90	AJ9	D	284	304	Right-handed alpha
Helix 91	AK1	D	321	332	Right-handed alpha
Helix 92	AK2	D	443	457	Right-handed alpha
Helix 93	AK3	D	481	489	Right-handed alpha
Helix 94	AK4	D	502	506	Right-handed 310
Helix 95	AK5	D	544	564	Right-handed alpha
Helix 96	AK6	D	612	644	Right-handed alpha
Helix 97	AK7	D	652	657	Right-handed alpha
Helix 98	AK8	D	670	678	Right-handed alpha
Helix 99	AK9	D	680	692	Right-handed alpha
Helix 100	AL1	D	693	696	Right-handed 310
Helix 101	AL2	D	701	712	Right-handed alpha
Helix 102	AL3	D	720	730	Right-handed alpha
Helix 103	AL4	D	753	769	Right-handed alpha
Helix 104	AL5	D	770	779	Right-handed alpha
Helix 105	AL6	D	801	808	Right-handed alpha
Helix 106	AL7	D	808	815	Right-handed alpha

There are 33 sheets in PDB entry 8GPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	50	first strand
Strand 2	A	2	10	parallel
Strand 3	A	73	74	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	113	115	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	138	143	parallel
Strand 3	A	192	196	parallel
Strand 4	A	220	223	parallel
Strand 5	A	242	247	parallel
Strand 6	A	356	361	anti-parallel
Strand 7	A	382	387	anti-parallel
Strand 8	A	393	394	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	340	342	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	419	first strand
Strand 2	A	459	464	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	441	442	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	736	748	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	715	719	anti-parallel
Strand 5	A	663	666	parallel
Strand 6	A	698	699	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	50	first strand
Strand 2	B	2	10	parallel
Strand 3	B	73	74	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	113	115	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	138	143	parallel
Strand 3	B	193	196	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	242	247	parallel
Strand 3	B	356	361	anti-parallel
Strand 4	B	382	388	anti-parallel
Strand 5	B	392	394	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	351	352	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	464	first strand
Strand 2	B	415	419	parallel
Strand 3	B	493	494	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	441	442	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	745	747	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	B	715	719	parallel
Strand 3	B	518	522	anti-parallel
Strand 4	B	739	742	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	6	11	parallel
Strand 3	C	73	74	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	114	115	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	138	143	parallel
Strand 3	C	192	195	parallel
Strand 4	C	220	223	parallel
Strand 5	C	242	247	parallel
Strand 6	C	356	360	anti-parallel
Strand 7	C	382	388	anti-parallel
Strand 8	C	392	395	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	340	341	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	419	first strand
Strand 2	C	459	464	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	428	first strand
Strand 2	C	441	442	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	509	first strand
Strand 2	C	749	750	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	517	first strand
Strand 2	C	743	744	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	664	first strand
Strand 2	C	714	719	parallel
Strand 3	C	519	524	anti-parallel
Strand 4	C	733	736	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	42	44	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	73	74	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	114	115	parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	138	143	parallel
Strand 3	D	192	195	parallel
Strand 4	D	220	223	parallel
Strand 5	D	242	247	parallel
Strand 6	D	356	360	anti-parallel
Strand 7	D	382	388	anti-parallel
Strand 8	D	392	395	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	336	first strand
Strand 2	D	341	344	anti-parallel
Strand 3	D	351	352	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	464	first strand
Strand 2	D	414	419	parallel
Strand 3	D	493	500	parallel
Strand 4	D	744	748	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	428	first strand
Strand 2	D	441	442	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	663	664	first strand
Strand 2	D	715	719	parallel
Strand 3	D	519	524	anti-parallel
Strand 4	D	733	736	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GPR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPR