Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GPV entry

There is 1 chain in PDB entry 8GPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8GPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
15 24Right-handed alpha
Helix 3
AA3
A
27 38Right-handed alpha
Helix 4
AA4
A
39 50Right-handed alpha
Helix 5
AA5
A
51 62Right-handed alpha
Helix 6
AA6
A
63 74Right-handed alpha
Helix 7
AA7
A
75 86Right-handed alpha
Helix 8
AA8
A
87 98Right-handed alpha
Helix 9
AA9
A
99 109Right-handed alpha
Helix 10
AB1
A
111 123Right-handed alpha
Helix 11
AB2
A
128 133Right-handed alpha
Helix 12
AB3
A
145 157Right-handed alpha
Helix 13
AB4
A
181 187Right-handed alpha
Helix 14
AB5
A
192 197Right-handed 310
Helix 15
AB6
A
209 221Right-handed alpha
Helix 16
AB7
A
240 255Right-handed alpha
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There are 2 sheets in PDB entry 8GPV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
165 169parallel
Strand 3
A
175 180anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
224 228parallel
Strand 3
A
234 239anti-parallel
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