Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GPW entry

There are 2 chains in PDB entry 8GPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 70	THR 570
B	SER 70	THR 570

There are 39 helices in PDB entry 8GPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	171	174	Right-handed 310
Helix 2	AA2	A	175	180	Right-handed alpha
Helix 3	AA3	A	190	196	Right-handed alpha
Helix 4	AA4	A	196	201	Right-handed alpha
Helix 5	AA5	A	237	255	Right-handed alpha
Helix 6	AA6	A	282	286	Right-handed 310
Helix 7	AA7	A	290	295	Right-handed alpha
Helix 8	AA8	A	296	301	Right-handed alpha
Helix 9	AA9	A	305	308	Right-handed 310
Helix 10	AB1	A	309	320	Right-handed alpha
Helix 11	AB2	A	352	358	Right-handed alpha
Helix 12	AB3	A	360	370	Right-handed alpha
Helix 13	AB4	A	373	383	Right-handed alpha
Helix 14	AB5	A	408	416	Right-handed alpha
Helix 15	AB6	A	424	437	Right-handed alpha
Helix 16	AB7	A	460	473	Right-handed alpha
Helix 17	AB8	A	474	476	Right-handed 310
Helix 18	AB9	A	481	485	Right-handed 310
Helix 19	AC1	A	541	546	Right-handed alpha
Helix 20	AC2	A	546	561	Right-handed alpha
Helix 21	AC3	B	171	174	Right-handed 310
Helix 22	AC4	B	175	180	Right-handed alpha
Helix 23	AC5	B	191	196	Right-handed alpha
Helix 24	AC6	B	196	201	Right-handed alpha
Helix 25	AC7	B	237	255	Right-handed alpha
Helix 26	AC8	B	290	295	Right-handed alpha
Helix 27	AC9	B	305	308	Right-handed 310
Helix 28	AD1	B	309	320	Right-handed alpha
Helix 29	AD2	B	352	359	Right-handed alpha
Helix 30	AD3	B	360	369	Right-handed alpha
Helix 31	AD4	B	373	383	Right-handed alpha
Helix 32	AD5	B	408	415	Right-handed alpha
Helix 33	AD6	B	416	418	Right-handed 310
Helix 34	AD7	B	424	437	Right-handed alpha
Helix 35	AD8	B	460	473	Right-handed alpha
Helix 36	AD9	B	474	476	Right-handed 310
Helix 37	AE1	B	481	485	Right-handed 310
Helix 38	AE2	B	541	546	Right-handed alpha
Helix 39	AE3	B	546	561	Right-handed alpha

There are 11 sheets in PDB entry 8GPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	81	86	anti-parallel
Strand 3	A	74	75	anti-parallel
Strand 4	A	232	233	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	278	first strand
Strand 2	A	259	266	anti-parallel
Strand 3	A	526	533	anti-parallel
Strand 4	A	507	519	anti-parallel
Strand 5	A	492	501	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	349	351	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	339	341	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	441	first strand
Strand 2	A	456	457	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	81	86	anti-parallel
Strand 3	B	74	75	anti-parallel
Strand 4	B	232	233	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	188	190	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	278	first strand
Strand 2	B	259	266	anti-parallel
Strand 3	B	526	533	anti-parallel
Strand 4	B	511	519	anti-parallel
Strand 5	B	492	499	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	349	351	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	339	341	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	456	457	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPW