Analysis of interatomic Contacts of Structural Units in PDB entry:
8GPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GPX entry

There are 3 chains in PDB entry 8GPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 CYS 3SER 394
H
 GLN 1PRO 226
L
 ILE 2GLU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8GPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
131 134Right-handed 310
Helix 2
AA2
E
206 212Right-handed alpha
Helix 3
AA3
E
227 230Right-handed 310
Helix 4
AA4
E
250 258Right-handed alpha
Helix 5
AA5
H
198 202Right-handed 310
Helix 6
AA6
L
80 84Right-handed 310
Helix 7
AA7
L
125 129Right-handed 310
Helix 8
AA8
L
185 190Right-handed alpha
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There are 18 sheets in PDB entry 8GPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 13first strand
Strand 2
E
18 24anti-parallel
Strand 3
E
280 288anti-parallel
Strand 4
E
176 185anti-parallel
Strand 5
E
167 172anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
158 162first strand
Strand 2
E
136 140anti-parallel
Strand 3
E
44 51anti-parallel
Strand 4
E
274 276anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 99first strand
Strand 2
E
109 129anti-parallel
Strand 3
E
195 197anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 99first strand
Strand 2
E
109 129anti-parallel
Strand 3
E
54 72anti-parallel
Strand 4
E
217 218anti-parallel
Strand 5
E
225 226anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
232 234first strand
Strand 2
E
244 246anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
298 299first strand
Strand 2
E
330 331parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
305 312first strand
Strand 2
E
318 323anti-parallel
Strand 3
E
362 367anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
334 337first strand
Strand 2
E
372 378anti-parallel
Strand 3
E
385 391anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
72 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
121 124parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 50anti-parallel
Strand 6
H
59 60anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 137first strand
Strand 2
H
149 158anti-parallel
Strand 3
H
189 197anti-parallel
Strand 4
H
176 178anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 137first strand
Strand 2
H
149 158anti-parallel
Strand 3
H
189 197anti-parallel
Strand 4
H
182 183anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
164 167first strand
Strand 2
H
208 213anti-parallel
Strand 3
H
218 223anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
105 107parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
33 39anti-parallel
Strand 4
L
86 92anti-parallel
Strand 5
L
99 100anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
161 162anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 157first strand
Strand 2
L
147 152anti-parallel
Strand 3
L
193 199anti-parallel
Strand 4
L
207 212anti-parallel
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