Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GQ1 entry

There are 3 chains in PDB entry 8GQ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 601	ARG 728
L	ASP 1	GLU 213
H	ASP 301	ILE 510

There are 15 helices in PDB entry 8GQ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	604	615	Right-handed alpha
Helix 2	AA2	C	619	623	Right-handed 310
Helix 3	AA3	C	624	637	Right-handed alpha
Helix 4	AA4	C	681	685	Right-handed 310
Helix 5	AA5	C	688	700	Right-handed alpha
Helix 6	AA6	C	703	707	Right-handed 310
Helix 7	AA7	C	708	715	Right-handed alpha
Helix 8	AA8	C	719	724	Right-handed 310
Helix 9	AA9	L	79	83	Right-handed 310
Helix 10	AB1	L	121	126	Right-handed alpha
Helix 11	AB2	L	182	189	Right-handed alpha
Helix 12	AB3	H	328	332	Right-handed 310
Helix 13	AB4	H	363	365	Right-handed 310
Helix 14	AB5	H	386	390	Right-handed 310
Helix 15	AB6	H	456	458	Right-handed 310

There are 11 sheets in PDB entry 8GQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	643	645	first strand
Strand 2	C	651	653	anti-parallel
Strand 3	C	658	659	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	665	first strand
Strand 2	C	678	679	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	131	139	anti-parallel
Strand 3	L	173	180	anti-parallel
Strand 4	L	159	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	145	149	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	303	307	first strand
Strand 2	H	318	325	anti-parallel
Strand 3	H	377	382	anti-parallel
Strand 4	H	367	372	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	311	312	first strand
Strand 2	H	407	411	parallel
Strand 3	H	391	397	anti-parallel
Strand 4	H	334	340	anti-parallel
Strand 5	H	344	351	anti-parallel
Strand 6	H	357	359	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	420	424	first strand
Strand 2	H	435	445	anti-parallel
Strand 3	H	474	484	anti-parallel
Strand 4	H	463	465	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	420	424	first strand
Strand 2	H	435	445	anti-parallel
Strand 3	H	474	484	anti-parallel
Strand 4	H	469	471	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	451	454	first strand
Strand 2	H	494	499	anti-parallel
Strand 3	H	504	509	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GQ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQ1