Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GQ4 entry

There are 2 chains in PDB entry 8GQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 265
A
 GLY 267LYS 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8GQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
93 107Right-handed alpha
Helix 3
AA3
A
187 191Right-handed 310
Helix 4
AA4
A
198 214Right-handed alpha
Helix 5
AA5
A
228 237Right-handed alpha
Helix 6
AA6
A
253 257Right-handed 310
Helix 7
AA7
A
264 276Right-handed alpha
Helix 8
AA8
A
283 292Right-handed alpha
Helix 9
AA9
A
294 299Right-handed alpha
Helix 10
AB1
A
326 338Right-handed alpha
Helix 11
AB2
A
344 359Right-handed alpha
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There are 2 sheets in PDB entry 8GQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
39 51anti-parallel
Strand 3
A
54 67anti-parallel
Strand 4
A
72 83anti-parallel
Strand 5
A
168 177parallel
Strand 6
A
304 314anti-parallel
Strand 7
A
219 223anti-parallel
Strand 8
A
242 244parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
39 51anti-parallel
Strand 3
A
12 19anti-parallel
Strand 4
A
323 325parallel
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