Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GQ6 entry

There are 6 chains in PDB entry 8GQ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 7	PRO 598
E	LYS 20	HIS 108
C	MET 25	ALA 768
B	GLN 8	PRO 598
F	MET 25	ALA 768
D	LYS 20	HIS 108

There are 90 helices in PDB entry 8GQ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	28	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	55	62	Right-handed alpha
Helix 4	AA4	A	78	92	Right-handed alpha
Helix 5	AA5	A	100	112	Right-handed alpha
Helix 6	AA6	A	113	126	Right-handed alpha
Helix 7	AA7	A	131	143	Right-handed alpha
Helix 8	AA8	A	145	164	Right-handed alpha
Helix 9	AA9	A	166	171	Right-handed alpha
Helix 10	AB1	A	173	183	Right-handed alpha
Helix 11	AB2	A	191	204	Right-handed alpha
Helix 12	AB3	A	209	221	Right-handed alpha
Helix 13	AB4	A	221	226	Right-handed alpha
Helix 14	AB5	A	228	237	Right-handed alpha
Helix 15	AB6	A	242	250	Right-handed alpha
Helix 16	AB7	E	81	88	Right-handed alpha
Helix 17	AB8	C	26	46	Right-handed alpha
Helix 18	AB9	C	54	67	Right-handed alpha
Helix 19	AC1	C	69	96	Right-handed alpha
Helix 20	AC2	C	100	134	Right-handed alpha
Helix 21	AC3	C	138	151	Right-handed alpha
Helix 22	AC4	C	156	175	Right-handed alpha
Helix 23	AC5	C	180	195	Right-handed alpha
Helix 24	AC6	C	199	228	Right-handed alpha
Helix 25	AC7	C	232	252	Right-handed alpha
Helix 26	AC8	C	257	273	Right-handed alpha
Helix 27	AC9	C	284	290	Right-handed alpha
Helix 28	AD1	C	292	304	Right-handed alpha
Helix 29	AD2	C	308	329	Right-handed alpha
Helix 30	AD3	C	337	360	Right-handed alpha
Helix 31	AD4	C	363	379	Right-handed alpha
Helix 32	AD5	C	383	398	Right-handed alpha
Helix 33	AD6	C	404	421	Right-handed alpha
Helix 34	AD7	C	424	441	Right-handed alpha
Helix 35	AD8	C	449	462	Right-handed alpha
Helix 36	AD9	C	466	495	Right-handed alpha
Helix 37	AE1	C	525	542	Right-handed alpha
Helix 38	AE2	C	598	608	Right-handed alpha
Helix 39	AE3	C	612	619	Right-handed alpha
Helix 40	AE4	C	624	635	Right-handed alpha
Helix 41	AE5	C	684	711	Right-handed alpha
Helix 42	AE6	C	712	714	Right-handed 310
Helix 43	AE7	C	721	730	Right-handed alpha
Helix 44	AE8	C	737	746	Right-handed alpha
Helix 45	AE9	C	747	751	Right-handed 310
Helix 46	AF1	B	10	28	Right-handed alpha
Helix 47	AF2	B	45	53	Right-handed alpha
Helix 48	AF3	B	56	61	Right-handed alpha
Helix 49	AF4	B	78	92	Right-handed alpha
Helix 50	AF5	B	100	112	Right-handed alpha
Helix 51	AF6	B	113	128	Right-handed alpha
Helix 52	AF7	B	132	143	Right-handed alpha
Helix 53	AF8	B	145	164	Right-handed alpha
Helix 54	AF9	B	166	170	Right-handed 310
Helix 55	AG1	B	173	183	Right-handed alpha
Helix 56	AG2	B	191	203	Right-handed alpha
Helix 57	AG3	B	209	217	Right-handed alpha
Helix 58	AG4	B	230	236	Right-handed alpha
Helix 59	AG5	B	244	250	Right-handed alpha
Helix 60	AG6	F	26	46	Right-handed alpha
Helix 61	AG7	F	54	67	Right-handed alpha
Helix 62	AG8	F	69	96	Right-handed alpha
Helix 63	AG9	F	100	134	Right-handed alpha
Helix 64	AH1	F	138	151	Right-handed alpha
Helix 65	AH2	F	156	175	Right-handed alpha
Helix 66	AH3	F	180	195	Right-handed alpha
Helix 67	AH4	F	199	205	Right-handed alpha
Helix 68	AH5	F	205	228	Right-handed alpha
Helix 69	AH6	F	232	252	Right-handed alpha
Helix 70	AH7	F	257	273	Right-handed alpha
Helix 71	AH8	F	284	290	Right-handed alpha
Helix 72	AH9	F	292	304	Right-handed alpha
Helix 73	AI1	F	308	329	Right-handed alpha
Helix 74	AI2	F	337	360	Right-handed alpha
Helix 75	AI3	F	363	379	Right-handed alpha
Helix 76	AI4	F	383	398	Right-handed alpha
Helix 77	AI5	F	404	421	Right-handed alpha
Helix 78	AI6	F	424	441	Right-handed alpha
Helix 79	AI7	F	449	462	Right-handed alpha
Helix 80	AI8	F	466	495	Right-handed alpha
Helix 81	AI9	F	525	542	Right-handed alpha
Helix 82	AJ1	F	598	608	Right-handed alpha
Helix 83	AJ2	F	614	619	Right-handed alpha
Helix 84	AJ3	F	624	635	Right-handed alpha
Helix 85	AJ4	F	684	711	Right-handed alpha
Helix 86	AJ5	F	712	714	Right-handed 310
Helix 87	AJ6	F	721	730	Right-handed alpha
Helix 88	AJ7	F	737	746	Right-handed alpha
Helix 89	AJ8	F	747	751	Right-handed 310
Helix 90	AJ9	D	81	86	Right-handed alpha

There are 24 sheets in PDB entry 8GQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	33	37	anti-parallel
Strand 3	A	71	73	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	586	first strand
Strand 2	A	266	275	anti-parallel
Strand 3	A	283	288	anti-parallel
Strand 4	A	295	298	anti-parallel
Strand 5	A	592	593	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	318	321	anti-parallel
Strand 3	A	350	353	anti-parallel
Strand 4	A	360	362	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	345	346	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	378	first strand
Strand 2	A	381	385	anti-parallel
Strand 3	A	399	403	anti-parallel
Strand 4	A	408	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	427	first strand
Strand 2	A	430	434	anti-parallel
Strand 3	A	439	443	anti-parallel
Strand 4	A	448	451	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	467	first strand
Strand 2	A	470	474	anti-parallel
Strand 3	A	499	503	anti-parallel
Strand 4	A	508	511	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	530	first strand
Strand 2	A	533	540	anti-parallel
Strand 3	A	548	555	anti-parallel
Strand 4	A	560	567	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	503	first strand
Strand 2	E	22	27	parallel
Strand 3	C	557	561	anti-parallel
Strand 4	C	591	594	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	509	first strand
Strand 2	E	30	35	parallel
Strand 3	C	546	549	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	70	72	anti-parallel
Strand 3	E	105	106	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	646	first strand
Strand 2	C	659	660	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	33	37	anti-parallel
Strand 3	B	71	73	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	298	first strand
Strand 2	B	283	288	anti-parallel
Strand 3	B	266	275	anti-parallel
Strand 4	B	580	586	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	312	first strand
Strand 2	B	318	321	anti-parallel
Strand 3	B	350	353	anti-parallel
Strand 4	B	360	362	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	345	346	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	378	first strand
Strand 2	B	381	385	anti-parallel
Strand 3	B	400	403	anti-parallel
Strand 4	B	408	411	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	427	first strand
Strand 2	B	430	434	anti-parallel
Strand 3	B	439	443	anti-parallel
Strand 4	B	448	451	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	467	first strand
Strand 2	B	470	474	anti-parallel
Strand 3	B	498	503	anti-parallel
Strand 4	B	508	514	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	530	first strand
Strand 2	B	533	541	anti-parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	560	566	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	502	503	first strand
Strand 2	D	22	27	parallel
Strand 3	F	557	561	anti-parallel
Strand 4	F	591	594	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	506	509	first strand
Strand 2	D	30	34	parallel
Strand 3	F	547	549	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	645	646	first strand
Strand 2	F	659	660	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	70	72	anti-parallel
Strand 3	D	105	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GQ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQ6