Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GQ9 entry

There is 1 chain in PDB entry 8GQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8GQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 35Right-handed alpha
Helix 2
AA2
A
69 77Right-handed alpha
Helix 3
AA3
A
92 107Right-handed alpha
Helix 4
AA4
A
117 123Right-handed alpha
Helix 5
AA5
A
174 188Right-handed alpha
Helix 6
AA6
A
190 193Right-handed 310
Helix 7
AA7
A
194 202Right-handed alpha
Helix 8
AA8
A
233 249Right-handed alpha
Helix 9
AA9
A
271 285Right-handed alpha
Helix 10
AB1
A
319 322Right-handed 310
Helix 11
AB2
A
326 332Right-handed alpha
Helix 12
AB3
A
340 349Right-handed alpha
Helix 13
AB4
A
359 362Right-handed 310
Helix 14
AB5
A
403 419Right-handed alpha
Helix 15
AB6
A
420 422Right-handed 310
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There are 6 sheets in PDB entry 8GQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
81 83parallel
Strand 3
A
38 43parallel
Strand 4
A
3 7parallel
Strand 5
A
364 373anti-parallel
Strand 6
A
376 386anti-parallel
Strand 7
A
400 401anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
11 13parallel
Strand 3
A
38 43parallel
Strand 4
A
3 7parallel
Strand 5
A
364 373anti-parallel
Strand 6
A
376 386anti-parallel
Strand 7
A
433 435anti-parallel
Strand 8
A
425 427anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
65 67parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
161 162anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
132 140anti-parallel
Strand 3
A
253 259parallel
Strand 4
A
288 292parallel
Strand 5
A
306 309parallel
Strand 6
A
300 303anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
167 173parallel
Strand 4
A
227 232anti-parallel
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