Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GQE entry

There are 2 chains in PDB entry 8GQE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 20	LEU 367
B	PRO 13	GLU 413

There are 11 helices in PDB entry 8GQE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	76	Right-handed alpha
Helix 2	AA2	A	88	92	Right-handed alpha
Helix 3	AA3	A	156	160	Right-handed 310
Helix 4	AA4	B	62	65	Right-handed 310
Helix 5	AA5	B	95	99	Right-handed 310
Helix 6	AA6	B	115	118	Right-handed 310
Helix 7	AA7	B	167	170	Right-handed 310
Helix 8	AA8	B	271	274	Right-handed 310
Helix 9	AA9	B	324	328	Right-handed 310
Helix 10	AB1	B	375	378	Right-handed 310
Helix 11	AB2	B	402	406	Right-handed 310

There are 14 sheets in PDB entry 8GQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	24	33	parallel
Strand 3	A	359	366	anti-parallel
Strand 4	A	347	354	anti-parallel
Strand 5	A	335	340	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	48	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	63	68	anti-parallel
Strand 4	A	94	97	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	125	129	anti-parallel
Strand 4	A	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	152	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	171	174	anti-parallel
Strand 4	A	185	187	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	202	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	219	223	anti-parallel
Strand 4	A	232	234	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	251	256	anti-parallel
Strand 3	A	260	265	anti-parallel
Strand 4	A	271	276	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	290	first strand
Strand 2	A	295	298	anti-parallel
Strand 3	A	305	309	anti-parallel
Strand 4	A	317	319	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	35	40	anti-parallel
Strand 4	B	55	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	74	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	141	145	anti-parallel
Strand 4	B	160	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	179	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	193	197	anti-parallel
Strand 4	B	212	217	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	316	322	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	335	first strand
Strand 2	B	339	344	anti-parallel
Strand 3	B	349	353	anti-parallel
Strand 4	B	368	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GQE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQE