Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GQG entry

There are 6 chains in PDB entry 8GQG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	LEU 395
B	ARG 2	LEU 395
C	ARG 2	LEU 395
D	ARG 2	LEU 395
E	ARG 2	LEU 395
F	ARG 2	LEU 395

There are128 helices in PDB entry 8GQG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	42	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	66	75	Right-handed alpha
Helix 5	AA5	A	88	90	Right-handed 310
Helix 6	AA6	A	91	106	Right-handed alpha
Helix 7	AA7	A	119	124	Right-handed alpha
Helix 8	AA8	A	134	141	Right-handed alpha
Helix 9	AA9	A	142	146	Right-handed 310
Helix 10	AB1	A	147	160	Right-handed alpha
Helix 11	AB2	A	162	183	Right-handed alpha
Helix 12	AB3	A	225	231	Right-handed alpha
Helix 13	AB4	A	243	247	Right-handed 310
Helix 14	AB5	A	262	268	Right-handed alpha
Helix 15	AB6	A	285	291	Right-handed 310
Helix 16	AB7	A	292	305	Right-handed alpha
Helix 17	AB8	A	307	311	Right-handed 310
Helix 18	AB9	A	320	331	Right-handed alpha
Helix 19	AC1	A	334	338	Right-handed 310
Helix 20	AC2	A	343	348	Right-handed alpha
Helix 21	AC3	A	353	369	Right-handed alpha
Helix 22	AC4	B	26	42	Right-handed alpha
Helix 23	AC5	B	45	49	Right-handed 310
Helix 24	AC6	B	60	64	Right-handed 310
Helix 25	AC7	B	66	75	Right-handed alpha
Helix 26	AC8	B	77	81	Right-handed 310
Helix 27	AC9	B	88	90	Right-handed 310
Helix 28	AD1	B	91	106	Right-handed alpha
Helix 29	AD2	B	119	124	Right-handed alpha
Helix 30	AD3	B	134	141	Right-handed alpha
Helix 31	AD4	B	142	146	Right-handed 310
Helix 32	AD5	B	147	159	Right-handed alpha
Helix 33	AD6	B	162	183	Right-handed alpha
Helix 34	AD7	B	225	232	Right-handed alpha
Helix 35	AD8	B	262	269	Right-handed alpha
Helix 36	AD9	B	285	291	Right-handed 310
Helix 37	AE1	B	292	304	Right-handed alpha
Helix 38	AE2	B	307	311	Right-handed 310
Helix 39	AE3	B	320	331	Right-handed alpha
Helix 40	AE4	B	334	338	Right-handed 310
Helix 41	AE5	B	343	348	Right-handed alpha
Helix 42	AE6	B	350	352	Right-handed 310
Helix 43	AE7	B	353	369	Right-handed alpha
Helix 44	AE8	C	26	42	Right-handed alpha
Helix 45	AE9	C	45	49	Right-handed 310
Helix 46	AF1	C	60	64	Right-handed 310
Helix 47	AF2	C	66	75	Right-handed alpha
Helix 48	AF3	C	88	90	Right-handed 310
Helix 49	AF4	C	91	106	Right-handed alpha
Helix 50	AF5	C	119	124	Right-handed alpha
Helix 51	AF6	C	134	141	Right-handed alpha
Helix 52	AF7	C	142	146	Right-handed 310
Helix 53	AF8	C	147	160	Right-handed alpha
Helix 54	AF9	C	162	183	Right-handed alpha
Helix 55	AG1	C	225	231	Right-handed alpha
Helix 56	AG2	C	243	247	Right-handed 310
Helix 57	AG3	C	262	268	Right-handed alpha
Helix 58	AG4	C	285	291	Right-handed 310
Helix 59	AG5	C	292	305	Right-handed alpha
Helix 60	AG6	C	307	311	Right-handed 310
Helix 61	AG7	C	320	331	Right-handed alpha
Helix 62	AG8	C	334	338	Right-handed 310
Helix 63	AG9	C	343	348	Right-handed alpha
Helix 64	AH1	C	353	369	Right-handed alpha
Helix 65	AH2	D	26	42	Right-handed alpha
Helix 66	AH3	D	45	49	Right-handed 310
Helix 67	AH4	D	60	64	Right-handed 310
Helix 68	AH5	D	66	75	Right-handed alpha
Helix 69	AH6	D	77	81	Right-handed 310
Helix 70	AH7	D	88	90	Right-handed 310
Helix 71	AH8	D	91	106	Right-handed alpha
Helix 72	AH9	D	119	124	Right-handed alpha
Helix 73	AI1	D	134	141	Right-handed alpha
Helix 74	AI2	D	142	146	Right-handed 310
Helix 75	AI3	D	147	159	Right-handed alpha
Helix 76	AI4	D	162	183	Right-handed alpha
Helix 77	AI5	D	225	232	Right-handed alpha
Helix 78	AI6	D	262	269	Right-handed alpha
Helix 79	AI7	D	285	291	Right-handed 310
Helix 80	AI8	D	292	304	Right-handed alpha
Helix 81	AI9	D	307	311	Right-handed 310
Helix 82	AJ1	D	320	331	Right-handed alpha
Helix 83	AJ2	D	334	338	Right-handed 310
Helix 84	AJ3	D	343	348	Right-handed alpha
Helix 85	AJ4	D	353	369	Right-handed alpha
Helix 86	AJ5	E	26	42	Right-handed alpha
Helix 87	AJ6	E	45	49	Right-handed 310
Helix 88	AJ7	E	60	64	Right-handed 310
Helix 89	AJ8	E	66	75	Right-handed alpha
Helix 90	AJ9	E	88	90	Right-handed 310
Helix 91	AK1	E	91	106	Right-handed alpha
Helix 92	AK2	E	119	124	Right-handed alpha
Helix 93	AK3	E	134	141	Right-handed alpha
Helix 94	AK4	E	142	146	Right-handed 310
Helix 95	AK5	E	147	160	Right-handed alpha
Helix 96	AK6	E	162	183	Right-handed alpha
Helix 97	AK7	E	225	231	Right-handed alpha
Helix 98	AK8	E	262	269	Right-handed alpha
Helix 99	AK9	E	285	291	Right-handed 310
Helix 100	AL1	E	292	305	Right-handed alpha
Helix 101	AL2	E	307	311	Right-handed 310
Helix 102	AL3	E	320	331	Right-handed alpha
Helix 103	AL4	E	334	338	Right-handed 310
Helix 104	AL5	E	343	348	Right-handed alpha
Helix 105	AL6	E	353	369	Right-handed alpha
Helix 106	AL7	F	26	42	Right-handed alpha
Helix 107	AL8	F	45	49	Right-handed 310
Helix 108	AL9	F	60	64	Right-handed 310
Helix 109	AM1	F	66	75	Right-handed alpha
Helix 110	AM2	F	77	81	Right-handed 310
Helix 111	AM3	F	88	90	Right-handed 310
Helix 112	AM4	F	91	106	Right-handed alpha
Helix 113	AM5	F	119	124	Right-handed alpha
Helix 114	AM6	F	134	141	Right-handed alpha
Helix 115	AM7	F	142	146	Right-handed 310
Helix 116	AM8	F	147	159	Right-handed alpha
Helix 117	AM9	F	162	183	Right-handed alpha
Helix 118	AN1	F	225	232	Right-handed alpha
Helix 119	AN2	F	243	247	Right-handed 310
Helix 120	AN3	F	262	269	Right-handed alpha
Helix 121	AN4	F	285	291	Right-handed 310
Helix 122	AN5	F	292	304	Right-handed alpha
Helix 123	AN6	F	307	311	Right-handed 310
Helix 124	AN7	F	320	331	Right-handed alpha
Helix 125	AN8	F	334	338	Right-handed 310
Helix 126	AN9	F	343	348	Right-handed alpha
Helix 127	AO1	F	350	352	Right-handed 310
Helix 128	AO2	F	353	369	Right-handed alpha

There are 12 sheets in PDB entry 8GQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	251	261	anti-parallel
Strand 3	A	111	118	anti-parallel
Strand 4	A	51	55	parallel
Strand 5	A	83	87	parallel
Strand 6	B	83	87	anti-parallel
Strand 7	B	52	55	parallel
Strand 8	B	111	118	parallel
Strand 9	B	251	261	anti-parallel
Strand 10	B	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	373	380	parallel
Strand 3	A	384	392	anti-parallel
Strand 4	A	274	283	anti-parallel
Strand 5	A	4	11	anti-parallel
Strand 6	A	251	261	anti-parallel
Strand 7	A	111	118	anti-parallel
Strand 8	A	51	55	parallel
Strand 9	A	83	87	parallel
Strand 10	B	83	87	anti-parallel
Strand 11	B	52	55	parallel
Strand 12	B	111	118	parallel
Strand 13	B	251	261	anti-parallel
Strand 14	B	4	11	anti-parallel
Strand 15	B	274	283	anti-parallel
Strand 16	B	384	392	anti-parallel
Strand 17	B	373	380	anti-parallel
Strand 18	B	313	316	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	198	first strand
Strand 2	A	209	214	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	200	first strand
Strand 2	B	207	214	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	251	261	anti-parallel
Strand 3	C	111	118	anti-parallel
Strand 4	C	51	55	parallel
Strand 5	C	83	87	parallel
Strand 6	D	83	87	anti-parallel
Strand 7	D	52	55	parallel
Strand 8	D	111	118	parallel
Strand 9	D	251	261	anti-parallel
Strand 10	D	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 18 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	316	first strand
Strand 2	C	373	380	parallel
Strand 3	C	384	392	anti-parallel
Strand 4	C	274	283	anti-parallel
Strand 5	C	4	11	anti-parallel
Strand 6	C	251	261	anti-parallel
Strand 7	C	111	118	anti-parallel
Strand 8	C	51	55	parallel
Strand 9	C	83	87	parallel
Strand 10	D	83	87	anti-parallel
Strand 11	D	52	55	parallel
Strand 12	D	111	118	parallel
Strand 13	D	251	261	anti-parallel
Strand 14	D	4	11	anti-parallel
Strand 15	D	274	283	anti-parallel
Strand 16	D	384	392	anti-parallel
Strand 17	D	373	380	anti-parallel
Strand 18	D	313	316	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	199	first strand
Strand 2	C	208	214	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	200	first strand
Strand 2	D	207	214	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	251	261	anti-parallel
Strand 3	E	111	118	anti-parallel
Strand 4	E	51	55	parallel
Strand 5	E	83	87	parallel
Strand 6	F	83	87	anti-parallel
Strand 7	F	52	55	parallel
Strand 8	F	111	118	parallel
Strand 9	F	251	261	anti-parallel
Strand 10	F	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 18 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	316	first strand
Strand 2	E	373	380	parallel
Strand 3	E	384	392	anti-parallel
Strand 4	E	274	283	anti-parallel
Strand 5	E	4	11	anti-parallel
Strand 6	E	251	261	anti-parallel
Strand 7	E	111	118	anti-parallel
Strand 8	E	51	55	parallel
Strand 9	E	83	87	parallel
Strand 10	F	83	87	anti-parallel
Strand 11	F	52	55	parallel
Strand 12	F	111	118	parallel
Strand 13	F	251	261	anti-parallel
Strand 14	F	4	11	anti-parallel
Strand 15	F	274	283	anti-parallel
Strand 16	F	384	392	anti-parallel
Strand 17	F	373	380	anti-parallel
Strand 18	F	313	316	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	199	first strand
Strand 2	E	208	214	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	200	first strand
Strand 2	F	207	214	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GQG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQG