Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GQH entry

There are 4 chains in PDB entry 8GQH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 402
B	SER 2	HIS 405
C	SER 2	LEU 402
D	SER 2	LEU 402

There are 66 helices in PDB entry 8GQH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	42	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	67	76	Right-handed alpha
Helix 4	AA4	A	89	91	Right-handed 310
Helix 5	AA5	A	92	107	Right-handed alpha
Helix 6	AA6	A	152	160	Right-handed alpha
Helix 7	AA7	A	163	176	Right-handed alpha
Helix 8	AA8	A	178	200	Right-handed alpha
Helix 9	AA9	A	231	238	Right-handed alpha
Helix 10	AB1	A	267	275	Right-handed alpha
Helix 11	AB2	A	291	297	Right-handed 310
Helix 12	AB3	A	298	311	Right-handed alpha
Helix 13	AB4	A	313	317	Right-handed 310
Helix 14	AB5	A	326	338	Right-handed alpha
Helix 15	AB6	A	351	356	Right-handed alpha
Helix 16	AB7	A	358	378	Right-handed alpha
Helix 17	AB8	B	26	42	Right-handed alpha
Helix 18	AB9	B	46	50	Right-handed 310
Helix 19	AC1	B	67	76	Right-handed alpha
Helix 20	AC2	B	89	91	Right-handed 310
Helix 21	AC3	B	92	107	Right-handed alpha
Helix 22	AC4	B	152	160	Right-handed alpha
Helix 23	AC5	B	163	176	Right-handed alpha
Helix 24	AC6	B	178	200	Right-handed alpha
Helix 25	AC7	B	231	237	Right-handed alpha
Helix 26	AC8	B	268	275	Right-handed alpha
Helix 27	AC9	B	291	297	Right-handed 310
Helix 28	AD1	B	298	311	Right-handed alpha
Helix 29	AD2	B	313	317	Right-handed 310
Helix 30	AD3	B	326	338	Right-handed alpha
Helix 31	AD4	B	351	356	Right-handed alpha
Helix 32	AD5	B	358	378	Right-handed alpha
Helix 33	AD6	C	26	42	Right-handed alpha
Helix 34	AD7	C	46	50	Right-handed 310
Helix 35	AD8	C	67	76	Right-handed alpha
Helix 36	AD9	C	89	91	Right-handed 310
Helix 37	AE1	C	92	107	Right-handed alpha
Helix 38	AE2	C	152	160	Right-handed alpha
Helix 39	AE3	C	163	175	Right-handed alpha
Helix 40	AE4	C	178	200	Right-handed alpha
Helix 41	AE5	C	200	206	Right-handed alpha
Helix 42	AE6	C	231	238	Right-handed alpha
Helix 43	AE7	C	267	275	Right-handed alpha
Helix 44	AE8	C	291	297	Right-handed 310
Helix 45	AE9	C	298	311	Right-handed alpha
Helix 46	AF1	C	313	317	Right-handed 310
Helix 47	AF2	C	326	338	Right-handed alpha
Helix 48	AF3	C	351	356	Right-handed alpha
Helix 49	AF4	C	358	378	Right-handed alpha
Helix 50	AF5	D	26	42	Right-handed alpha
Helix 51	AF6	D	46	50	Right-handed 310
Helix 52	AF7	D	67	76	Right-handed alpha
Helix 53	AF8	D	89	91	Right-handed 310
Helix 54	AF9	D	92	107	Right-handed alpha
Helix 55	AG1	D	152	160	Right-handed alpha
Helix 56	AG2	D	163	175	Right-handed alpha
Helix 57	AG3	D	178	200	Right-handed alpha
Helix 58	AG4	D	200	206	Right-handed alpha
Helix 59	AG5	D	231	237	Right-handed alpha
Helix 60	AG6	D	268	275	Right-handed alpha
Helix 61	AG7	D	291	297	Right-handed 310
Helix 62	AG8	D	298	311	Right-handed alpha
Helix 63	AG9	D	313	317	Right-handed 310
Helix 64	AH1	D	326	338	Right-handed alpha
Helix 65	AH2	D	351	356	Right-handed alpha
Helix 66	AH3	D	358	378	Right-handed alpha

There are 10 sheets in PDB entry 8GQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	257	266	anti-parallel
Strand 3	A	112	120	anti-parallel
Strand 4	A	52	56	parallel
Strand 5	A	84	88	parallel
Strand 6	B	84	88	anti-parallel
Strand 7	B	52	56	parallel
Strand 8	B	112	120	parallel
Strand 9	B	257	267	anti-parallel
Strand 10	B	16	17	anti-parallel

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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	322	first strand
Strand 2	A	381	388	parallel
Strand 3	A	392	400	anti-parallel
Strand 4	A	280	289	anti-parallel
Strand 5	A	6	12	anti-parallel
Strand 6	A	257	266	anti-parallel
Strand 7	A	112	120	anti-parallel
Strand 8	A	52	56	parallel
Strand 9	A	84	88	parallel
Strand 10	B	84	88	anti-parallel
Strand 11	B	52	56	parallel
Strand 12	B	112	120	parallel
Strand 13	B	257	267	anti-parallel
Strand 14	B	5	12	anti-parallel
Strand 15	B	280	289	anti-parallel
Strand 16	B	392	400	anti-parallel
Strand 17	B	381	388	anti-parallel
Strand 18	B	319	322	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	126	128	anti-parallel
Strand 3	B	126	128	anti-parallel
Strand 4	B	141	143	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	218	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	218	220	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	257	266	anti-parallel
Strand 3	C	112	120	anti-parallel
Strand 4	C	52	56	parallel
Strand 5	C	84	88	parallel
Strand 6	D	84	88	anti-parallel
Strand 7	D	52	56	parallel
Strand 8	D	112	120	parallel
Strand 9	D	257	267	anti-parallel
Strand 10	D	16	17	anti-parallel

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There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	322	first strand
Strand 2	C	381	388	parallel
Strand 3	C	392	400	anti-parallel
Strand 4	C	280	289	anti-parallel
Strand 5	C	6	12	anti-parallel
Strand 6	C	257	266	anti-parallel
Strand 7	C	112	120	anti-parallel
Strand 8	C	52	56	parallel
Strand 9	C	84	88	parallel
Strand 10	D	84	88	anti-parallel
Strand 11	D	52	56	parallel
Strand 12	D	112	120	parallel
Strand 13	D	257	267	anti-parallel
Strand 14	D	5	12	anti-parallel
Strand 15	D	280	289	anti-parallel
Strand 16	D	392	400	anti-parallel
Strand 17	D	381	388	anti-parallel
Strand 18	D	319	322	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	126	128	anti-parallel
Strand 3	D	126	128	anti-parallel
Strand 4	D	141	143	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	217	220	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	211	first strand
Strand 2	D	218	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GQH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQH