Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GQI entry

There are 2 chains in PDB entry 8GQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 401
B
 MET 1CYS 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8GQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 41Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
87 89Right-handed 310
Helix 5
AA5
A
90 105Right-handed alpha
Helix 6
AA6
A
150 158Right-handed alpha
Helix 7
AA7
A
161 174Right-handed alpha
Helix 8
AA8
A
176 198Right-handed alpha
Helix 9
AA9
A
200 204Right-handed 310
Helix 10
AB1
A
231 238Right-handed alpha
Helix 11
AB2
A
266 274Right-handed alpha
Helix 12
AB3
A
290 295Right-handed 310
Helix 13
AB4
A
296 310Right-handed alpha
Helix 14
AB5
A
312 314Right-handed 310
Helix 15
AB6
A
325 336Right-handed alpha
Helix 16
AB7
A
350 355Right-handed alpha
Helix 17
AB8
A
357 374Right-handed alpha
Helix 18
AB9
B
25 41Right-handed alpha
Helix 19
AC1
B
44 48Right-handed 310
Helix 20
AC2
B
65 74Right-handed alpha
Helix 21
AC3
B
87 89Right-handed 310
Helix 22
AC4
B
90 105Right-handed alpha
Helix 23
AC5
B
150 158Right-handed alpha
Helix 24
AC6
B
161 174Right-handed alpha
Helix 25
AC7
B
176 197Right-handed alpha
Helix 26
AC8
B
231 238Right-handed alpha
Helix 27
AC9
B
266 274Right-handed alpha
Helix 28
AD1
B
290 296Right-handed 310
Helix 29
AD2
B
297 310Right-handed alpha
Helix 30
AD3
B
312 314Right-handed 310
Helix 31
AD4
B
325 337Right-handed alpha
Helix 32
AD5
B
350 355Right-handed alpha
Helix 33
AD6
B
360 374Right-handed alpha
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There are 5 sheets in PDB entry 8GQI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
256 265anti-parallel
Strand 3
A
110 118anti-parallel
Strand 4
A
50 54parallel
Strand 5
A
82 86parallel
Strand 6
B
82 86anti-parallel
Strand 7
B
50 54parallel
Strand 8
B
110 118parallel
Strand 9
B
256 265anti-parallel
Strand 10
B
15 16anti-parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 321first strand
Strand 2
A
380 387parallel
Strand 3
A
391 399anti-parallel
Strand 4
A
279 288anti-parallel
Strand 5
A
4 11anti-parallel
Strand 6
A
256 265anti-parallel
Strand 7
A
110 118anti-parallel
Strand 8
A
50 54parallel
Strand 9
A
82 86parallel
Strand 10
B
82 86anti-parallel
Strand 11
B
50 54parallel
Strand 12
B
110 118parallel
Strand 13
B
256 265anti-parallel
Strand 14
B
4 11anti-parallel
Strand 15
B
279 288anti-parallel
Strand 16
B
391 399anti-parallel
Strand 17
B
380 387anti-parallel
Strand 18
B
316 321parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
124 126anti-parallel
Strand 3
B
124 126anti-parallel
Strand 4
B
139 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
217 220anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
217 220anti-parallel
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