Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GQK entry

There are 2 chains in PDB entry 8GQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 395
B
 GLU 4LEU 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8GQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 44Right-handed alpha
Helix 2
AA2
A
67 76Right-handed alpha
Helix 3
AA3
A
89 91Right-handed 310
Helix 4
AA4
A
92 107Right-handed alpha
Helix 5
AA5
A
145 151Right-handed alpha
Helix 6
AA6
A
160 173Right-handed alpha
Helix 7
AA7
A
175 196Right-handed alpha
Helix 8
AA8
A
199 203Right-handed 310
Helix 9
AA9
A
222 226Right-handed 310
Helix 10
AB1
A
227 234Right-handed 310
Helix 11
AB2
A
245 249Right-handed 310
Helix 12
AB3
A
264 270Right-handed alpha
Helix 13
AB4
A
287 292Right-handed 310
Helix 14
AB5
A
293 307Right-handed alpha
Helix 15
AB6
A
309 313Right-handed 310
Helix 16
AB7
A
322 334Right-handed alpha
Helix 17
AB8
A
336 340Right-handed 310
Helix 18
AB9
A
345 350Right-handed alpha
Helix 19
AC1
A
352 371Right-handed alpha
Helix 20
AC2
B
28 44Right-handed alpha
Helix 21
AC3
B
67 76Right-handed alpha
Helix 22
AC4
B
89 91Right-handed 310
Helix 23
AC5
B
92 107Right-handed alpha
Helix 24
AC6
B
145 151Right-handed alpha
Helix 25
AC7
B
160 173Right-handed alpha
Helix 26
AC8
B
175 196Right-handed alpha
Helix 27
AC9
B
199 203Right-handed 310
Helix 28
AD1
B
222 226Right-handed 310
Helix 29
AD2
B
227 234Right-handed 310
Helix 30
AD3
B
264 270Right-handed alpha
Helix 31
AD4
B
287 292Right-handed 310
Helix 32
AD5
B
293 307Right-handed alpha
Helix 33
AD6
B
309 313Right-handed 310
Helix 34
AD7
B
322 334Right-handed alpha
Helix 35
AD8
B
336 340Right-handed 310
Helix 36
AD9
B
345 350Right-handed alpha
Helix 37
AE1
B
352 371Right-handed alpha
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There are 5 sheets in PDB entry 8GQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
253 263anti-parallel
Strand 3
A
112 120anti-parallel
Strand 4
A
53 57parallel
Strand 5
A
84 88parallel
Strand 6
B
84 88anti-parallel
Strand 7
B
53 57parallel
Strand 8
B
113 120parallel
Strand 9
B
253 263anti-parallel
Strand 10
B
18 19anti-parallel
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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
375 382parallel
Strand 3
A
386 393anti-parallel
Strand 4
A
276 285anti-parallel
Strand 5
A
7 14anti-parallel
Strand 6
A
253 263anti-parallel
Strand 7
A
112 120anti-parallel
Strand 8
A
53 57parallel
Strand 9
A
84 88parallel
Strand 10
B
84 88anti-parallel
Strand 11
B
53 57parallel
Strand 12
B
113 120parallel
Strand 13
B
253 263anti-parallel
Strand 14
B
7 14anti-parallel
Strand 15
B
276 285anti-parallel
Strand 16
B
386 393anti-parallel
Strand 17
B
375 382anti-parallel
Strand 18
B
315 318parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
126 128anti-parallel
Strand 3
B
126 128anti-parallel
Strand 4
B
143 144anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
213 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 210first strand
Strand 2
B
213 217anti-parallel
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