Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GQM entry

There is 1 chain in PDB entry 8GQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4LEU 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8GQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 44Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
90 92Right-handed 310
Helix 6
AA6
A
93 108Right-handed alpha
Helix 7
AA7
A
135 142Right-handed alpha
Helix 8
AA8
A
143 147Right-handed 310
Helix 9
AA9
A
148 160Right-handed alpha
Helix 10
AB1
A
163 184Right-handed alpha
Helix 11
AB2
A
212 218Right-handed alpha
Helix 12
AB3
A
228 232Right-handed 310
Helix 13
AB4
A
247 253Right-handed alpha
Helix 14
AB5
A
270 276Right-handed 310
Helix 15
AB6
A
277 290Right-handed alpha
Helix 16
AB7
A
292 296Right-handed 310
Helix 17
AB8
A
305 317Right-handed alpha
Helix 18
AB9
A
319 323Right-handed 310
Helix 19
AC1
A
328 333Right-handed alpha
Helix 20
AC2
A
335 355Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8GQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
236 246anti-parallel
Strand 3
A
113 121anti-parallel
Strand 4
A
53 57parallel
Strand 5
A
84 88parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
236 246anti-parallel
Strand 3
A
6 13anti-parallel
Strand 4
A
259 268anti-parallel
Strand 5
A
369 376anti-parallel
Strand 6
A
358 365anti-parallel
Strand 7
A
298 301parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
199 201anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il