Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GQR entry

There are 2 chains in PDB entry 8GQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLY 370
B
 ALA -2GLY 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8GQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
55 60Right-handed 310
Helix 3
AA3
A
62 67Right-handed 310
Helix 4
AA4
A
96 110Right-handed alpha
Helix 5
AA5
A
122 130Right-handed alpha
Helix 6
AA6
A
147 150Right-handed 310
Helix 7
AA7
A
204 211Right-handed alpha
Helix 8
AA8
A
217 229Right-handed alpha
Helix 9
AA9
A
229 234Right-handed alpha
Helix 10
AB1
A
266 269Right-handed 310
Helix 11
AB2
A
273 277Right-handed 310
Helix 12
AB3
A
278 297Right-handed alpha
Helix 13
AB4
A
299 332Right-handed alpha
Helix 14
AB5
A
333 336Right-handed 310
Helix 15
AB6
A
339 350Right-handed alpha
Helix 16
AB7
A
356 370Right-handed alpha
Helix 17
AB8
B
8 22Right-handed alpha
Helix 18
AB9
B
55 60Right-handed 310
Helix 19
AC1
B
62 67Right-handed 310
Helix 20
AC2
B
96 110Right-handed alpha
Helix 21
AC3
B
122 130Right-handed alpha
Helix 22
AC4
B
147 151Right-handed 310
Helix 23
AC5
B
204 211Right-handed alpha
Helix 24
AC6
B
212 216Right-handed 310
Helix 25
AC7
B
217 229Right-handed alpha
Helix 26
AC8
B
229 234Right-handed alpha
Helix 27
AC9
B
266 269Right-handed 310
Helix 28
AD1
B
273 277Right-handed 310
Helix 29
AD2
B
278 297Right-handed alpha
Helix 30
AD3
B
299 331Right-handed alpha
Helix 31
AD4
B
332 335Right-handed 310
Helix 32
AD5
B
339 349Right-handed alpha
Helix 33
AD6
B
356 370Right-handed alpha
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There are 5 sheets in PDB entry 8GQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
26 31parallel
Strand 3
A
1 5parallel
Strand 4
A
132 135parallel
Strand 5
A
262 264parallel
Strand 6
A
258 259anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
81 95anti-parallel
Strand 3
A
69 78anti-parallel
Strand 4
A
173 179parallel
Strand 5
A
184 191anti-parallel
Strand 6
A
197 203anti-parallel
Strand 7
A
152 166anti-parallel
Strand 8
A
247 254anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
26 30parallel
Strand 3
B
1 5parallel
Strand 4
B
132 135parallel
Strand 5
B
262 264parallel
Strand 6
B
258 259anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
81 95anti-parallel
Strand 3
B
69 78anti-parallel
Strand 4
B
173 180parallel
Strand 5
B
183 191anti-parallel
Strand 6
B
197 203anti-parallel
Strand 7
B
153 166anti-parallel
Strand 8
B
238 240anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
81 95anti-parallel
Strand 3
B
69 78anti-parallel
Strand 4
B
173 180parallel
Strand 5
B
183 191anti-parallel
Strand 6
B
197 203anti-parallel
Strand 7
B
153 166anti-parallel
Strand 8
B
247 253anti-parallel
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