Analysis of interatomic Contacts of Structural Units in PDB entry:
8GQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GQZ entry

There are 2 chains in PDB entry 8GQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38LYS 478
B
 GLU 42SER 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8GQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 68Right-handed alpha
Helix 2
AA2
A
77 81Right-handed alpha
Helix 3
AA3
A
109 117Right-handed alpha
Helix 4
AA4
A
127 138Right-handed alpha
Helix 5
AA5
A
142 156Right-handed alpha
Helix 6
AA6
A
160 170Right-handed alpha
Helix 7
AA7
A
175 187Right-handed alpha
Helix 8
AA8
A
188 190Right-handed 310
Helix 9
AA9
A
191 199Right-handed alpha
Helix 10
AB1
A
202 204Right-handed 310
Helix 11
AB2
A
205 234Right-handed alpha
Helix 12
AB3
A
246 256Right-handed alpha
Helix 13
AB4
A
259 274Right-handed alpha
Helix 14
AB5
A
280 292Right-handed alpha
Helix 15
AB6
A
295 308Right-handed alpha
Helix 16
AB7
A
314 331Right-handed alpha
Helix 17
AB8
A
335 349Right-handed alpha
Helix 18
AB9
A
365 379Right-handed alpha
Helix 19
AC1
A
382 403Right-handed alpha
Helix 20
AC2
A
411 414Right-handed 310
Helix 21
AC3
A
415 423Right-handed alpha
Helix 22
AC4
A
427 429Right-handed 310
Helix 23
AC5
A
430 454Right-handed alpha
Helix 24
AC6
A
464 478Right-handed alpha
Helix 25
AC7
B
44 68Right-handed alpha
Helix 26
AC8
B
77 81Right-handed alpha
Helix 27
AC9
B
109 117Right-handed alpha
Helix 28
AD1
B
127 138Right-handed alpha
Helix 29
AD2
B
142 156Right-handed alpha
Helix 30
AD3
B
160 170Right-handed alpha
Helix 31
AD4
B
175 187Right-handed alpha
Helix 32
AD5
B
188 190Right-handed 310
Helix 33
AD6
B
191 199Right-handed alpha
Helix 34
AD7
B
202 204Right-handed 310
Helix 35
AD8
B
205 234Right-handed alpha
Helix 36
AD9
B
246 256Right-handed alpha
Helix 37
AE1
B
259 274Right-handed alpha
Helix 38
AE2
B
280 292Right-handed alpha
Helix 39
AE3
B
295 308Right-handed alpha
Helix 40
AE4
B
314 330Right-handed alpha
Helix 41
AE5
B
335 349Right-handed alpha
Helix 42
AE6
B
365 379Right-handed alpha
Helix 43
AE7
B
382 403Right-handed alpha
Helix 44
AE8
B
412 423Right-handed alpha
Helix 45
AE9
B
427 429Right-handed 310
Helix 46
AF1
B
430 454Right-handed alpha
Helix 47
AF2
B
464 476Right-handed alpha
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There are 5 sheets in PDB entry 8GQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
B
71 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
B
461 463parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
102 105anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
B
88 91parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
102 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il