Analysis of interatomic Contacts of Structural Units in PDB entry:
8GR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GR8 entry

There are 2 chains in PDB entry 8GR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23LYS 459
B
 GLN 22LEU 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8GR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 49Right-handed alpha
Helix 2
AA2
A
58 62Right-handed alpha
Helix 3
AA3
A
90 98Right-handed alpha
Helix 4
AA4
A
108 119Right-handed alpha
Helix 5
AA5
A
123 137Right-handed alpha
Helix 6
AA6
A
141 151Right-handed alpha
Helix 7
AA7
A
156 168Right-handed alpha
Helix 8
AA8
A
169 171Right-handed 310
Helix 9
AA9
A
172 180Right-handed alpha
Helix 10
AB1
A
183 185Right-handed 310
Helix 11
AB2
A
186 215Right-handed alpha
Helix 12
AB3
A
227 237Right-handed alpha
Helix 13
AB4
A
240 254Right-handed alpha
Helix 14
AB5
A
261 273Right-handed alpha
Helix 15
AB6
A
276 289Right-handed alpha
Helix 16
AB7
A
295 312Right-handed alpha
Helix 17
AB8
A
316 330Right-handed alpha
Helix 18
AB9
A
346 360Right-handed alpha
Helix 19
AC1
A
363 384Right-handed alpha
Helix 20
AC2
A
392 395Right-handed 310
Helix 21
AC3
A
396 404Right-handed alpha
Helix 22
AC4
A
408 410Right-handed 310
Helix 23
AC5
A
411 435Right-handed alpha
Helix 24
AC6
A
445 458Right-handed alpha
Helix 25
AC7
B
25 49Right-handed alpha
Helix 26
AC8
B
58 62Right-handed alpha
Helix 27
AC9
B
90 98Right-handed alpha
Helix 28
AD1
B
108 119Right-handed alpha
Helix 29
AD2
B
123 137Right-handed alpha
Helix 30
AD3
B
141 151Right-handed alpha
Helix 31
AD4
B
156 168Right-handed alpha
Helix 32
AD5
B
169 171Right-handed 310
Helix 33
AD6
B
172 181Right-handed alpha
Helix 34
AD7
B
183 185Right-handed 310
Helix 35
AD8
B
186 215Right-handed alpha
Helix 36
AD9
B
227 237Right-handed alpha
Helix 37
AE1
B
240 254Right-handed alpha
Helix 38
AE2
B
261 272Right-handed alpha
Helix 39
AE3
B
276 289Right-handed alpha
Helix 40
AE4
B
295 312Right-handed alpha
Helix 41
AE5
B
316 330Right-handed alpha
Helix 42
AE6
B
346 358Right-handed alpha
Helix 43
AE7
B
363 384Right-handed alpha
Helix 44
AE8
B
393 395Right-handed 310
Helix 45
AE9
B
396 404Right-handed alpha
Helix 46
AF1
B
408 410Right-handed 310
Helix 47
AF2
B
411 434Right-handed alpha
Helix 48
AF3
B
445 459Right-handed alpha
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There are 6 sheets in PDB entry 8GR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
B
52 57anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
B
442 444parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
83 86anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
B
69 72parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
83 86anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
388 391anti-parallel
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