Analysis of interatomic Contacts of Structural Units in PDB entry:
8GRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GRD entry

There are 2 chains in PDB entry 8GRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ASP 337
B
 PHE 15ASP 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8GRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
82 92Right-handed alpha
Helix 4
AA4
A
123 127Right-handed 310
Helix 5
AA5
A
146 163Right-handed alpha
Helix 6
AA6
A
179 194Right-handed alpha
Helix 7
AA7
A
205 213Right-handed alpha
Helix 8
AA8
A
215 219Right-handed 310
Helix 9
AA9
A
225 240Right-handed alpha
Helix 10
AB1
A
242 245Right-handed 310
Helix 11
AB2
A
266 270Right-handed 310
Helix 12
AB3
A
277 291Right-handed alpha
Helix 13
AB4
A
293 311Right-handed alpha
Helix 14
AB5
A
315 319Right-handed 310
Helix 15
AB6
A
323 336Right-handed alpha
Helix 16
AB7
B
25 41Right-handed alpha
Helix 17
AB8
B
58 74Right-handed alpha
Helix 18
AB9
B
93 102Right-handed alpha
Helix 19
AC1
B
134 139Right-handed 310
Helix 20
AC2
B
157 174Right-handed alpha
Helix 21
AC3
B
190 205Right-handed alpha
Helix 22
AC4
B
216 226Right-handed alpha
Helix 23
AC5
B
227 230Right-handed 310
Helix 24
AC6
B
236 251Right-handed alpha
Helix 25
AC7
B
277 281Right-handed 310
Helix 26
AC8
B
288 302Right-handed alpha
Helix 27
AC9
B
304 322Right-handed alpha
Helix 28
AD1
B
326 330Right-handed 310
Helix 29
AD2
B
334 348Right-handed alpha
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There are 3 sheets in PDB entry 8GRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
5 10parallel
Strand 3
A
66 69parallel
Strand 4
A
257 261parallel
Strand 5
A
247 251anti-parallel
Strand 6
A
95 101anti-parallel
Strand 7
A
114 120anti-parallel
Strand 8
A
221 224parallel
Strand 9
A
167 172parallel
Strand 10
A
199 204parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
137 145anti-parallel
Strand 3
B
148 156anti-parallel
Strand 4
B
141 145anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
16 20parallel
Strand 3
B
75 78parallel
Strand 4
B
267 271parallel
Strand 5
B
258 262anti-parallel
Strand 6
B
106 112anti-parallel
Strand 7
B
125 131anti-parallel
Strand 8
B
232 235parallel
Strand 9
B
178 183parallel
Strand 10
B
210 215parallel
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