Analysis of interatomic Contacts of Structural Units in PDB entry:
8GRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GRE entry

There are 4 chains in PDB entry 8GRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23LEU 460
B
 GLN 22LYS 459
C
 SER 6ARG 369
D
 SER 85ARG 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8GRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 49Right-handed alpha
Helix 2
AA2
A
58 62Right-handed alpha
Helix 3
AA3
A
90 98Right-handed alpha
Helix 4
AA4
A
108 119Right-handed alpha
Helix 5
AA5
A
123 137Right-handed alpha
Helix 6
AA6
A
141 151Right-handed alpha
Helix 7
AA7
A
156 168Right-handed alpha
Helix 8
AA8
A
169 171Right-handed 310
Helix 9
AA9
A
172 181Right-handed alpha
Helix 10
AB1
A
183 185Right-handed 310
Helix 11
AB2
A
186 215Right-handed alpha
Helix 12
AB3
A
227 237Right-handed alpha
Helix 13
AB4
A
240 254Right-handed alpha
Helix 14
AB5
A
261 273Right-handed alpha
Helix 15
AB6
A
276 289Right-handed alpha
Helix 16
AB7
A
295 312Right-handed alpha
Helix 17
AB8
A
316 330Right-handed alpha
Helix 18
AB9
A
346 360Right-handed alpha
Helix 19
AC1
A
363 384Right-handed alpha
Helix 20
AC2
A
393 404Right-handed alpha
Helix 21
AC3
A
408 410Right-handed 310
Helix 22
AC4
A
411 434Right-handed alpha
Helix 23
AC5
A
445 459Right-handed alpha
Helix 24
AC6
B
25 49Right-handed alpha
Helix 25
AC7
B
58 62Right-handed alpha
Helix 26
AC8
B
90 98Right-handed alpha
Helix 27
AC9
B
108 119Right-handed alpha
Helix 28
AD1
B
123 137Right-handed alpha
Helix 29
AD2
B
141 151Right-handed alpha
Helix 30
AD3
B
156 168Right-handed alpha
Helix 31
AD4
B
169 171Right-handed 310
Helix 32
AD5
B
172 180Right-handed alpha
Helix 33
AD6
B
183 185Right-handed 310
Helix 34
AD7
B
186 215Right-handed alpha
Helix 35
AD8
B
227 237Right-handed alpha
Helix 36
AD9
B
240 254Right-handed alpha
Helix 37
AE1
B
261 273Right-handed alpha
Helix 38
AE2
B
276 289Right-handed alpha
Helix 39
AE3
B
295 312Right-handed alpha
Helix 40
AE4
B
316 330Right-handed alpha
Helix 41
AE5
B
346 360Right-handed alpha
Helix 42
AE6
B
363 384Right-handed alpha
Helix 43
AE7
B
393 395Right-handed 310
Helix 44
AE8
B
396 404Right-handed alpha
Helix 45
AE9
B
408 410Right-handed 310
Helix 46
AF1
B
411 434Right-handed alpha
Helix 47
AF2
B
445 459Right-handed alpha
Helix 48
AF3
C
7 11Right-handed 310
Helix 49
AF4
C
12 23Right-handed alpha
Helix 50
AF5
C
23 28Right-handed alpha
Helix 51
AF6
C
31 50Right-handed alpha
Helix 52
AF7
C
54 70Right-handed alpha
Helix 53
AF8
C
71 80Right-handed alpha
Helix 54
AF9
C
93 97Right-handed 310
Helix 55
AG1
C
103 113Right-handed alpha
Helix 56
AG2
C
181 187Right-handed 310
Helix 57
AG3
C
209 214Right-handed 310
Helix 58
AG4
C
232 237Right-handed 310
Helix 59
AG5
C
290 294Right-handed 310
Helix 60
AG6
C
296 315Right-handed alpha
Helix 61
AG7
C
352 359Right-handed alpha
Helix 62
AG8
D
86 96Right-handed alpha
Helix 63
AG9
D
117 124Right-handed alpha
Helix 64
AH1
D
127 141Right-handed alpha
Helix 65
AH2
D
143 159Right-handed alpha
Helix 66
AH3
D
162 171Right-handed alpha
Helix 67
AH4
D
177 191Right-handed alpha
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There are 9 sheets in PDB entry 8GRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
B
52 57anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
B
442 444parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
83 86anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
388 391anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
B
69 72parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
83 86anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
388 391anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 118first strand
Strand 2
C
264 270anti-parallel
Strand 3
C
170 177anti-parallel
Strand 4
C
218 226anti-parallel
Strand 5
C
280 285anti-parallel
Strand 6
C
341 344anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 157first strand
Strand 2
C
243 252anti-parallel
Strand 3
C
189 195anti-parallel
Strand 4
C
202 204anti-parallel
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