Analysis of interatomic Contacts of Structural Units in PDB entry:
8GRN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GRN entry

There are 2 chains in PDB entry 8GRN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 717
B
 ALA 2VAL 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8GRN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 30Right-handed alpha
Helix 2
AA2
A
39 43Right-handed 310
Helix 3
AA3
A
74 81Right-handed alpha
Helix 4
AA4
A
92 126Right-handed alpha
Helix 5
AA5
A
130 135Right-handed alpha
Helix 6
AA6
A
159 193Right-handed alpha
Helix 7
AA7
A
220 229Right-handed alpha
Helix 8
AA8
A
241 261Right-handed alpha
Helix 9
AA9
A
291 296Right-handed alpha
Helix 10
AB1
A
296 316Right-handed alpha
Helix 11
AB2
A
333 338Right-handed alpha
Helix 12
AB3
A
361 365Right-handed 310
Helix 13
AB4
A
368 402Right-handed alpha
Helix 14
AB5
A
420 451Right-handed alpha
Helix 15
AB6
A
457 496Right-handed alpha
Helix 16
AB7
A
501 533Right-handed alpha
Helix 17
AB8
A
535 547Right-handed alpha
Helix 18
AB9
A
569 585Right-handed alpha
Helix 19
AC1
A
591 612Right-handed alpha
Helix 20
AC2
A
623 650Right-handed alpha
Helix 21
AC3
A
655 683Right-handed alpha
Helix 22
AC4
A
685 694Right-handed alpha
Helix 23
AC5
A
704 711Right-handed alpha
Helix 24
AC6
B
3 30Right-handed alpha
Helix 25
AC7
B
39 43Right-handed 310
Helix 26
AC8
B
74 81Right-handed alpha
Helix 27
AC9
B
92 126Right-handed alpha
Helix 28
AD1
B
130 135Right-handed alpha
Helix 29
AD2
B
159 193Right-handed alpha
Helix 30
AD3
B
220 229Right-handed alpha
Helix 31
AD4
B
242 262Right-handed alpha
Helix 32
AD5
B
296 306Right-handed alpha
Helix 33
AD6
B
333 338Right-handed alpha
Helix 34
AD7
B
361 365Right-handed 310
Helix 35
AD8
B
368 402Right-handed alpha
Helix 36
AD9
B
420 451Right-handed alpha
Helix 37
AE1
B
457 496Right-handed alpha
Helix 38
AE2
B
501 533Right-handed alpha
Helix 39
AE3
B
535 547Right-handed alpha
Helix 40
AE4
B
569 585Right-handed alpha
Helix 41
AE5
B
591 612Right-handed alpha
Helix 42
AE6
B
623 650Right-handed alpha
Helix 43
AE7
B
655 683Right-handed alpha
Helix 44
AE8
B
685 694Right-handed alpha
Helix 45
AE9
B
704 711Right-handed alpha
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There are 2 sheets in PDB entry 8GRN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
320 327anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
350 351anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 240first strand
Strand 2
B
320 327anti-parallel
Strand 3
B
203 207anti-parallel
Strand 4
B
350 351anti-parallel
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