Analysis of interatomic Contacts of Structural Units in PDB entry:
8GRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GRV entry

There is 1 chain in PDB entry 8GRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1ILE 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8GRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
37 42Right-handed 310
Helix 3
AA3
A
56 65Right-handed alpha
Helix 4
AA4
A
82 89Right-handed alpha
Helix 5
AA5
A
100 118Right-handed alpha
Helix 6
AA6
A
118 128Right-handed alpha
Helix 7
AA7
A
140 143Right-handed 310
Helix 8
AA8
A
152 166Right-handed alpha
Helix 9
AA9
A
178 183Right-handed alpha
Helix 10
AB1
A
191 199Right-handed alpha
Helix 11
AB2
A
217 224Right-handed alpha
Helix 12
AB3
A
235 239Right-handed 310
Helix 13
AB4
A
240 250Right-handed alpha
Helix 14
AB5
A
263 267Right-handed 310
Helix 15
AB6
A
279 288Right-handed alpha
Helix 16
AB7
A
301 321Right-handed alpha
Helix 17
AB8
A
325 329Right-handed 310
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There are 2 sheets in PDB entry 8GRV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
2 5parallel
Strand 3
A
46 49parallel
Strand 4
A
70 73parallel
Strand 5
A
93 94parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
169 173parallel
Strand 3
A
145 149parallel
Strand 4
A
201 204parallel
Strand 5
A
228 232parallel
Strand 6
A
253 258parallel
Strand 7
A
291 293parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il