Analysis of interatomic Contacts of Structural Units in PDB entry:
8GRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GRY entry

There are 2 chains in PDB entry 8GRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ASP 615
B
 THR 333PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8GRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 53Right-handed alpha
Helix 2
AA2
A
55 80Right-handed alpha
Helix 3
AA3
A
81 83Right-handed 310
Helix 4
AA4
A
92 102Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
109 129Right-handed alpha
Helix 7
AA7
A
147 154Right-handed alpha
Helix 8
AA8
A
157 193Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
220 231Right-handed alpha
Helix 11
AB2
A
233 252Right-handed alpha
Helix 12
AB3
A
265 267Right-handed 310
Helix 13
AB4
A
275 277Right-handed 310
Helix 14
AB5
A
278 283Right-handed alpha
Helix 15
AB6
A
293 301Right-handed alpha
Helix 16
AB7
A
303 318Right-handed alpha
Helix 17
AB8
A
326 331Right-handed alpha
Helix 18
AB9
A
365 385Right-handed alpha
Helix 19
AC1
A
386 388Right-handed 310
Helix 20
AC2
A
389 393Right-handed 310
Helix 21
AC3
A
399 413Right-handed alpha
Helix 22
AC4
A
414 422Right-handed alpha
Helix 23
AC5
A
431 447Right-handed alpha
Helix 24
AC6
A
449 465Right-handed alpha
Helix 25
AC7
A
472 484Right-handed alpha
Helix 26
AC8
A
499 502Right-handed 310
Helix 27
AC9
A
503 509Right-handed alpha
Helix 28
AD1
A
513 532Right-handed alpha
Helix 29
AD2
A
538 542Right-handed 310
Helix 30
AD3
A
547 559Right-handed alpha
Helix 31
AD4
A
565 574Right-handed alpha
Helix 32
AD5
A
581 599Right-handed alpha
Helix 33
AD6
B
405 410Right-handed 310
Helix 34
AD7
B
417 422Right-handed alpha
Helix 35
AD8
B
502 505Right-handed 310
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There are 5 sheets in PDB entry 8GRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 380anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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