Analysis of interatomic Contacts of Structural Units in PDB entry:
8GS2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GS2 entry

There are 4 chains in PDB entry 8GS2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	U 0	A 37
D	U 1	G 23
A	MET 1	SER 1603
B	ASN 3	PRO 553

There are 75 helices in PDB entry 8GS2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	30	36	Right-handed alpha
Helix 3	AA3	A	37	39	Right-handed 310
Helix 4	AA4	A	57	76	Right-handed alpha
Helix 5	AA5	A	94	98	Right-handed 310
Helix 6	AA6	A	123	130	Right-handed alpha
Helix 7	AA7	A	163	166	Right-handed 310
Helix 8	AA8	A	211	225	Right-handed alpha
Helix 9	AA9	A	262	276	Right-handed alpha
Helix 10	AB1	A	281	291	Right-handed alpha
Helix 11	AB2	A	292	299	Right-handed 310
Helix 12	AB3	A	328	338	Right-handed alpha
Helix 13	AB4	A	340	343	Right-handed 310
Helix 14	AB5	A	344	366	Right-handed alpha
Helix 15	AB6	A	443	460	Right-handed alpha
Helix 16	AB7	A	474	481	Right-handed alpha
Helix 17	AB8	A	542	554	Right-handed alpha
Helix 18	AB9	A	562	566	Right-handed 310
Helix 19	AC1	A	584	594	Right-handed alpha
Helix 20	AC2	A	595	598	Right-handed 310
Helix 21	AC3	A	599	607	Right-handed alpha
Helix 22	AC4	A	608	610	Right-handed 310
Helix 23	AC5	A	643	648	Right-handed alpha
Helix 24	AC6	A	675	689	Right-handed alpha
Helix 25	AC7	A	699	701	Right-handed 310
Helix 26	AC8	A	708	714	Right-handed alpha
Helix 27	AC9	A	780	784	Right-handed alpha
Helix 28	AD1	A	785	801	Right-handed alpha
Helix 29	AD2	A	809	813	Right-handed 310
Helix 30	AD3	A	946	962	Right-handed alpha
Helix 31	AD4	A	1019	1024	Right-handed alpha
Helix 32	AD5	A	1025	1031	Right-handed alpha
Helix 33	AD6	A	1163	1169	Right-handed alpha
Helix 34	AD7	A	1179	1183	Right-handed 310
Helix 35	AD8	A	1231	1247	Right-handed alpha
Helix 36	AD9	A	1254	1258	Right-handed 310
Helix 37	AE1	A	1259	1264	Right-handed alpha
Helix 38	AE2	A	1300	1305	Right-handed 310
Helix 39	AE3	A	1322	1326	Right-handed 310
Helix 40	AE4	A	1331	1336	Right-handed 310
Helix 41	AE5	A	1342	1348	Right-handed alpha
Helix 42	AE6	A	1395	1400	Right-handed alpha
Helix 43	AE7	A	1420	1426	Right-handed alpha
Helix 44	AE8	A	1464	1477	Right-handed alpha
Helix 45	AE9	A	1488	1492	Right-handed 310
Helix 46	AF1	A	1518	1534	Right-handed alpha
Helix 47	AF2	A	1538	1549	Right-handed alpha
Helix 48	AF3	A	1565	1569	Right-handed 310
Helix 49	AF4	A	1575	1581	Right-handed alpha
Helix 50	AF5	A	1585	1587	Right-handed 310
Helix 51	AF6	A	1588	1594	Right-handed alpha
Helix 52	AF7	B	4	14	Right-handed alpha
Helix 53	AF8	B	19	39	Right-handed alpha
Helix 54	AF9	B	41	46	Right-handed 310
Helix 55	AG1	B	52	64	Right-handed alpha
Helix 56	AG2	B	65	88	Right-handed alpha
Helix 57	AG3	B	92	109	Right-handed alpha
Helix 58	AG4	B	117	134	Right-handed alpha
Helix 59	AG5	B	143	164	Right-handed alpha
Helix 60	AG6	B	167	185	Right-handed alpha
Helix 61	AG7	B	191	199	Right-handed alpha
Helix 62	AG8	B	200	202	Right-handed 310
Helix 63	AG9	B	207	222	Right-handed alpha
Helix 64	AH1	B	226	232	Right-handed alpha
Helix 65	AH2	B	239	254	Right-handed alpha
Helix 66	AH3	B	256	270	Right-handed alpha
Helix 67	AH4	B	277	293	Right-handed alpha
Helix 68	AH5	B	297	312	Right-handed alpha
Helix 69	AH6	B	328	340	Right-handed alpha
Helix 70	AH7	B	342	355	Right-handed alpha
Helix 71	AH8	B	431	437	Right-handed alpha
Helix 72	AH9	B	464	481	Right-handed alpha
Helix 73	AI1	B	485	500	Right-handed alpha
Helix 74	AI2	B	520	525	Right-handed 310
Helix 75	AI3	B	542	546	Right-handed 310

There are 22 sheets in PDB entry 8GS2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	199	207	anti-parallel
Strand 3	A	2	11	anti-parallel
Strand 4	A	231	237	anti-parallel
Strand 5	A	227	228	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	183	192	anti-parallel
Strand 3	A	168	176	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	54	56	anti-parallel
Strand 3	A	153	154	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	83	84	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	394	395	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	557	558	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	611	612	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	504	first strand
Strand 2	A	511	521	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	723	725	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	664	first strand
Strand 2	A	667	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	625	634	anti-parallel
Strand 6	A	817	823	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	655	657	anti-parallel
Strand 3	A	751	760	parallel
Strand 4	A	739	744	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	693	first strand
Strand 2	A	696	697	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1558	1559	first strand
Strand 2	A	861	862	parallel
Strand 3	A	1599	1601	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	868	first strand
Strand 2	A	1412	1415	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	1362	1364	anti-parallel
Strand 3	A	1453	1463	anti-parallel
Strand 4	A	891	901	anti-parallel
Strand 5	A	1495	1506	anti-parallel
Strand 6	A	1483	1484	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1357	1359	first strand
Strand 2	A	1453	1463	anti-parallel
Strand 3	A	891	901	anti-parallel
Strand 4	A	1495	1506	anti-parallel
Strand 5	A	1512	1514	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	A	932	936	anti-parallel
Strand 3	A	1443	1445	parallel
Strand 4	A	1386	1387	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	978	first strand
Strand 2	A	1294	1296	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1284	1288	first strand
Strand 2	A	1274	1279	anti-parallel
Strand 3	A	991	995	anti-parallel
Strand 4	A	1001	1012	anti-parallel
Strand 5	A	1215	1229	anti-parallel
Strand 6	A	1142	1149	anti-parallel
Strand 7	A	1035	1040	anti-parallel
Strand 8	A	1128	1130	anti-parallel
Strand 9	A	1001	1012	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1156	1159	first strand
Strand 2	A	1208	1211	anti-parallel
Strand 3	A	1195	1202	anti-parallel
Strand 4	A	1187	1190	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	462	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	425	430	anti-parallel
Strand 4	B	515	518	parallel
Strand 5	B	549	551	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GS2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GS2