Analysis of interatomic Contacts of Structural Units in PDB entry:
8GS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GS3 entry

There are 2 chains in PDB entry 8GS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 41ASN 633
B
 ALA 41ASN 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8GS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
120 126Right-handed alpha
Helix 3
AA3
A
126 135Right-handed alpha
Helix 4
AA4
A
221 229Right-handed alpha
Helix 5
AA5
A
239 245Right-handed alpha
Helix 6
AA6
A
255 272Right-handed alpha
Helix 7
AA7
A
273 275Right-handed 310
Helix 8
AA8
A
288 299Right-handed alpha
Helix 9
AA9
A
300 304Right-handed 310
Helix 10
AB1
A
326 339Right-handed alpha
Helix 11
AB2
A
344 355Right-handed alpha
Helix 12
AB3
A
356 363Right-handed alpha
Helix 13
AB4
A
386 394Right-handed alpha
Helix 14
AB5
A
395 399Right-handed 310
Helix 15
AB6
A
411 416Right-handed alpha
Helix 16
AB7
A
425 442Right-handed alpha
Helix 17
AB8
A
446 458Right-handed alpha
Helix 18
AB9
A
466 483Right-handed alpha
Helix 19
AC1
A
483 495Right-handed alpha
Helix 20
AC2
A
496 498Right-handed 310
Helix 21
AC3
A
526 531Right-handed alpha
Helix 22
AC4
A
532 537Right-handed alpha
Helix 23
AC5
A
547 568Right-handed alpha
Helix 24
AC6
A
617 626Right-handed alpha
Helix 25
AC7
A
626 632Right-handed alpha
Helix 26
AC8
B
79 83Right-handed 310
Helix 27
AC9
B
120 126Right-handed alpha
Helix 28
AD1
B
126 135Right-handed alpha
Helix 29
AD2
B
215 219Right-handed 310
Helix 30
AD3
B
221 229Right-handed alpha
Helix 31
AD4
B
240 245Right-handed alpha
Helix 32
AD5
B
255 272Right-handed alpha
Helix 33
AD6
B
273 275Right-handed 310
Helix 34
AD7
B
288 299Right-handed alpha
Helix 35
AD8
B
300 304Right-handed 310
Helix 36
AD9
B
326 339Right-handed alpha
Helix 37
AE1
B
344 355Right-handed alpha
Helix 38
AE2
B
356 363Right-handed alpha
Helix 39
AE3
B
386 394Right-handed alpha
Helix 40
AE4
B
395 399Right-handed 310
Helix 41
AE5
B
411 416Right-handed alpha
Helix 42
AE6
B
425 442Right-handed alpha
Helix 43
AE7
B
446 458Right-handed alpha
Helix 44
AE8
B
466 483Right-handed alpha
Helix 45
AE9
B
483 495Right-handed alpha
Helix 46
AF1
B
496 498Right-handed 310
Helix 47
AF2
B
526 531Right-handed alpha
Helix 48
AF3
B
532 537Right-handed alpha
Helix 49
AF4
B
547 568Right-handed alpha
Helix 50
AF5
B
617 626Right-handed alpha
Helix 51
AF6
B
626 632Right-handed alpha
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There are 4 sheets in PDB entry 8GS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
49 52anti-parallel
Strand 3
A
96 98parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
143 149anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
200 206parallel
Strand 6
A
277 287parallel
Strand 7
A
309 313parallel
Strand 8
A
400 406parallel
Strand 9
A
501 506parallel
Strand 10
A
602 606parallel
Strand 11
A
611 614anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
49 52anti-parallel
Strand 3
B
96 98parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
66 73anti-parallel
Strand 3
B
143 149anti-parallel
Strand 4
B
231 236anti-parallel
Strand 5
B
200 206parallel
Strand 6
B
277 287parallel
Strand 7
B
309 313parallel
Strand 8
B
400 406parallel
Strand 9
B
501 506parallel
Strand 10
B
602 606parallel
Strand 11
B
611 614anti-parallel
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