Analysis of interatomic Contacts of Structural Units in PDB entry:
8GS4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GS4 entry

There are 2 chains in PDB entry 8GS4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 42HIS 609
B
 PRO 42HIS 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8GS4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 126Right-handed alpha
Helix 2
AA2
A
126 132Right-handed alpha
Helix 3
AA3
A
193 197Right-handed 310
Helix 4
AA4
A
199 205Right-handed alpha
Helix 5
AA5
A
217 221Right-handed 310
Helix 6
AA6
A
232 248Right-handed alpha
Helix 7
AA7
A
265 267Right-handed 310
Helix 8
AA8
A
268 273Right-handed alpha
Helix 9
AA9
A
303 309Right-handed alpha
Helix 10
AB1
A
325 330Right-handed alpha
Helix 11
AB2
A
363 368Right-handed alpha
Helix 12
AB3
A
405 417Right-handed alpha
Helix 13
AB4
A
423 435Right-handed alpha
Helix 14
AB5
A
437 441Right-handed 310
Helix 15
AB6
A
450 453Right-handed 310
Helix 16
AB7
A
454 460Right-handed alpha
Helix 17
AB8
A
463 474Right-handed alpha
Helix 18
AB9
A
503 509Right-handed alpha
Helix 19
AC1
A
510 514Right-handed 310
Helix 20
AC2
A
526 545Right-handed alpha
Helix 21
AC3
A
594 604Right-handed alpha
Helix 22
AC4
A
604 609Right-handed alpha
Helix 23
AC5
B
120 126Right-handed alpha
Helix 24
AC6
B
126 132Right-handed alpha
Helix 25
AC7
B
193 197Right-handed 310
Helix 26
AC8
B
199 205Right-handed alpha
Helix 27
AC9
B
217 221Right-handed 310
Helix 28
AD1
B
232 248Right-handed alpha
Helix 29
AD2
B
265 267Right-handed 310
Helix 30
AD3
B
268 273Right-handed alpha
Helix 31
AD4
B
303 309Right-handed alpha
Helix 32
AD5
B
325 330Right-handed alpha
Helix 33
AD6
B
363 368Right-handed alpha
Helix 34
AD7
B
405 417Right-handed alpha
Helix 35
AD8
B
423 435Right-handed alpha
Helix 36
AD9
B
437 441Right-handed 310
Helix 37
AE1
B
450 453Right-handed 310
Helix 38
AE2
B
454 460Right-handed alpha
Helix 39
AE3
B
463 474Right-handed alpha
Helix 40
AE4
B
503 509Right-handed alpha
Helix 41
AE5
B
510 514Right-handed 310
Helix 42
AE6
B
526 545Right-handed alpha
Helix 43
AE7
B
594 604Right-handed alpha
Helix 44
AE8
B
604 609Right-handed alpha
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There are 12 sheets in PDB entry 8GS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
49 51anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
65 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
143 144anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
177 183parallel
Strand 3
A
254 259parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
177 183parallel
Strand 3
A
262 263parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
380 383parallel
Strand 3
A
482 483parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
49 51anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
65 68anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
143 144anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
177 183parallel
Strand 3
B
254 259parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
177 183parallel
Strand 3
B
262 263parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
380 383parallel
Strand 3
B
482 483parallel
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