Analysis of interatomic Contacts of Structural Units in PDB entry:
8GS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GS8 entry

There are 4 chains in PDB entry 8GS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 51	TYR 664
B	THR 35	TYR 273
C	ALA 34	MET 169
D	SER 59	LEU 159

There are 38 helices in PDB entry 8GS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	55	Right-handed 310
Helix 2	AA2	A	70	84	Right-handed alpha
Helix 3	AA3	A	94	102	Right-handed 310
Helix 4	AA4	A	118	131	Right-handed alpha
Helix 5	AA5	A	135	155	Right-handed alpha
Helix 6	AA6	A	195	209	Right-handed alpha
Helix 7	AA7	A	259	263	Right-handed 310
Helix 8	AA8	A	274	282	Right-handed alpha
Helix 9	AA9	A	308	315	Right-handed alpha
Helix 10	AB1	A	326	331	Right-handed alpha
Helix 11	AB2	A	341	352	Right-handed alpha
Helix 12	AB3	A	372	379	Right-handed alpha
Helix 13	AB4	A	380	390	Right-handed alpha
Helix 14	AB5	A	454	475	Right-handed alpha
Helix 15	AB6	A	489	501	Right-handed alpha
Helix 16	AB7	A	508	523	Right-handed alpha
Helix 17	AB8	A	528	545	Right-handed alpha
Helix 18	AB9	A	559	585	Right-handed alpha
Helix 19	AC1	B	71	83	Right-handed alpha
Helix 20	AC2	B	143	153	Right-handed alpha
Helix 21	AC3	B	173	178	Right-handed alpha
Helix 22	AC4	B	179	181	Right-handed 310
Helix 23	AC5	B	192	195	Right-handed 310
Helix 24	AC6	B	196	202	Right-handed alpha
Helix 25	AC7	B	207	220	Right-handed alpha
Helix 26	AC8	B	231	235	Right-handed 310
Helix 27	AC9	B	247	253	Right-handed alpha
Helix 28	AD1	B	258	272	Right-handed alpha
Helix 29	AD2	C	35	48	Right-handed alpha
Helix 30	AD3	C	62	92	Right-handed alpha
Helix 31	AD4	C	95	106	Right-handed alpha
Helix 32	AD5	C	109	139	Right-handed alpha
Helix 33	AD6	C	144	168	Right-handed alpha
Helix 34	AD7	D	62	80	Right-handed alpha
Helix 35	AD8	D	80	86	Right-handed alpha
Helix 36	AD9	D	88	115	Right-handed alpha
Helix 37	AE1	D	117	146	Right-handed alpha
Helix 38	AE2	D	147	157	Right-handed alpha

There are 11 sheets in PDB entry 8GS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	244	248	parallel
Strand 3	A	230	238	anti-parallel
Strand 4	A	219	227	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	64	67	parallel
Strand 3	A	251	254	parallel
Strand 4	A	431	437	parallel
Strand 5	A	420	422	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	189	190	anti-parallel
Strand 3	A	170	171	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	624	631	anti-parallel
Strand 3	A	636	643	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	408	409	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	400	403	anti-parallel
Strand 3	A	364	367	anti-parallel
Strand 4	A	317	319	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	442	443	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	A	549	550	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	593	594	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	64	first strand
Strand 2	B	39	46	anti-parallel
Strand 3	B	124	128	parallel
Strand 4	B	102	105	anti-parallel
Strand 5	B	108	111	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	140	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GS8