Analysis of interatomic Contacts of Structural Units in PDB entry:
8GSC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GSC entry

There are 5 chains in PDB entry 8GSC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 TYR 56HIS 292
2
 ARG 81ALA 327
3
 MET 5GLN 238
H
 GLU 2SER 118
L
 TYR 1ARG 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8GSC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
59 62Right-handed 310
Helix 2
AA2
1
63 69Right-handed alpha
Helix 3
AA3
1
85 88Right-handed 310
Helix 4
AA4
1
100 108Right-handed alpha
Helix 5
AA5
1
160 164Right-handed 310
Helix 6
AA6
2
152 156Right-handed 310
Helix 7
AA7
2
158 168Right-handed alpha
Helix 8
AA8
2
211 216Right-handed alpha
Helix 9
AA9
2
238 242Right-handed 310
Helix 10
AB1
2
247 254Right-handed 310
Helix 11
AB2
3
43 48Right-handed alpha
Helix 12
AB3
3
64 68Right-handed 310
Helix 13
AB4
3
98 105Right-handed alpha
Helix 14
AB5
3
144 151Right-handed alpha
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There are 16 sheets in PDB entry 8GSC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
72 79first strand
Strand 2
1
234 250anti-parallel
Strand 3
1
110 125anti-parallel
Strand 4
1
192 193anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
179 183first strand
Strand 2
1
110 125anti-parallel
Strand 3
1
234 250anti-parallel
Strand 4
3
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
90 94first strand
Strand 2
1
218 223anti-parallel
Strand 3
1
141 147anti-parallel
Strand 4
1
169 173anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
82 87first strand
Strand 2
2
91 96anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
101 102first strand
Strand 2
2
266 271parallel
Strand 3
2
171 181anti-parallel
Strand 4
2
308 314anti-parallel
Strand 5
2
138 140anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
133 134first strand
Strand 2
2
308 314anti-parallel
Strand 3
2
171 181anti-parallel
Strand 4
2
317 321anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
222 223first strand
Strand 2
2
147 151anti-parallel
Strand 3
2
288 299anti-parallel
Strand 4
2
188 197anti-parallel
Strand 5
2
256 260anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 52first strand
Strand 2
3
208 225anti-parallel
Strand 3
3
107 121anti-parallel
Strand 4
3
163 168anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
70 72first strand
Strand 2
3
208 225anti-parallel
Strand 3
3
107 121anti-parallel
Strand 4
3
177 178anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
81 86first strand
Strand 2
3
189 193anti-parallel
Strand 3
3
129 135anti-parallel
Strand 4
3
152 157anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
33 36first strand
Strand 2
H
96 99anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
39 40first strand
Strand 2
H
44 45anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
68 73first strand
Strand 2
H
78 83anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
93 94first strand
Strand 2
H
112 113anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 71anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
59 60first strand
Strand 2
L
54 55anti-parallel
Strand 3
L
40 41anti-parallel
Strand 4
L
94 95anti-parallel
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